Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_G10
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    24   1.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.4  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   7.2  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
 Frame = +1

Query: 472 LPLTVSLYFSSSVLALISKAAAPGMTHLSSMALLIARRPSRTASLIC--VKVCLLGPLMR 645
           L ++ S   + +  AL+SK +   M H+ +  L         A ++C  V   ++G L  
Sbjct: 246 LSISASCVIAFATSALVSKDSKFNMVHIQNSTLAGGVAIGTAAGMMCQPVGTLIVGALAG 305

Query: 646 MVTDCGFLHCSTKV--NLSSPSTC 711
           +++  G+ + +  +  +L    TC
Sbjct: 306 LLSVLGYKYITPLIQKHLKIHDTC 329


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 429 YS*NSGR*LWLRCSRYYSK 373
           +S N+G  +WL CS ++ +
Sbjct: 407 WSVNAGMWMWLSCSSFFQQ 425


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 405 VNGQSFRNNQKSFGISLDSKTSLAFNSVL 491
           +NG+SF      FG++L   T   + S L
Sbjct: 240 INGESFTLQSGIFGMALSPLTQNLYYSAL 268


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,891
Number of Sequences: 438
Number of extensions: 4091
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)