Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_G09
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45117| Best HMM Match : Band_41 (HMM E-Value=7.4e-26)               28   5.5  
SB_54195| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)             27   9.7  
SB_1848| Best HMM Match : Galactosyl_T (HMM E-Value=1.4e-26)           27   9.7  
SB_52114| Best HMM Match : Galactosyl_T (HMM E-Value=3.5e-25)          27   9.7  
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_12733| Best HMM Match : Trypsin (HMM E-Value=2e-11)                 27   9.7  

>SB_45117| Best HMM Match : Band_41 (HMM E-Value=7.4e-26)
          Length = 458

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 559 GYFLLPVQVDKEKKRRPYFYQNKLGIFFSRTKCSYY 452
           G FL PV +D++     YF Q KLG + S+     Y
Sbjct: 178 GKFLKPVSIDQQAVLDSYFAQLKLGDYDSKKNSKGY 213


>SB_54195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 370

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 302 ARERLKLDLLTIAYAKPFLHQSYQDIFPFHW 394
           A +RL  DL+T  Y + F + SY+    F W
Sbjct: 120 AEDRLYGDLITSEYREGFFNMSYKVAMGFEW 150


>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
          Length = 1531

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 71  VLKTKPMVLPGQPGFP 24
           ++ TKP VLPG PG P
Sbjct: 879 IINTKPAVLPGLPGTP 894


>SB_1848| Best HMM Match : Galactosyl_T (HMM E-Value=1.4e-26)
          Length = 308

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 302 ARERLKLDLLTIAYAKPFLHQSYQDIFPFHW 394
           A +RL  DL+T  Y + F + SY+    F W
Sbjct: 116 AEDRLYGDLITSEYREGFFNMSYKVAMGFEW 146


>SB_52114| Best HMM Match : Galactosyl_T (HMM E-Value=3.5e-25)
          Length = 383

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 302 ARERLKLDLLTIAYAKPFLHQSYQDIFPFHW 394
           A +RL  DL+T  Y + F + SY+    F W
Sbjct: 191 AEDRLYGDLITSEYREGFFNMSYKVAMGFEW 221


>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3292

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 292  WKNIGESVLILFVVFTGNPWT 230
            W  I E++L+   +  GNPWT
Sbjct: 3023 WATISEAILLWSTMSEGNPWT 3043


>SB_12733| Best HMM Match : Trypsin (HMM E-Value=2e-11)
          Length = 376

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 526 EKKRRPYFYQNKLGIFFSRTKCSYYSK 446
           E  R  YF Q+   +FF++ +CS +SK
Sbjct: 10  EISRSMYFLQSTRRVFFAQQQCSLFSK 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,933,910
Number of Sequences: 59808
Number of extensions: 459097
Number of successful extensions: 978
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)