Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_G09
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68303-4|CAA92637.1|  210|Caenorhabditis elegans Hypothetical pr...    81   5e-16
U97592-4|AAB52872.1|  450|Caenorhabditis elegans Hypothetical pr...    28   4.9  
L00665-1|AAA28148.1|  537|Caenorhabditis elegans protein ( Caeno...    27   8.5  

>Z68303-4|CAA92637.1|  210|Caenorhabditis elegans Hypothetical
           protein ZK809.3 protein.
          Length = 210

 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 46/124 (37%), Positives = 66/124 (53%), Gaps = 1/124 (0%)
 Frame = -1

Query: 416 MTIVGRVASERERCLGMTDAERAWRKQWLKDQVLAAHEPVHVEEYWRERTNPIRRFYRKP 237
           M++   +A ER R  G++ AER WRK+W+ DQ L A EPV V+   R+  NPIR  YR P
Sbjct: 41  MSLELHMADERVRAAGLSPAEREWRKKWVHDQHLHADEPVVVDAVHRQ-LNPIRTAYRLP 99

Query: 236 LDVLFAK-LTPMLGEQRAAHYRYISGKLGLIAVAMLSTHYYFKYLGNDWTKKGGWKVLKT 60
            D  +   L P  G       R  + KL +  V + + +YY+KY   DWT   G + +  
Sbjct: 100 WDKFYLHYLKPTFGVYYGTAIRVTAPKLLMAFVVVQTAYYYWKYEVKDWTHLRGLESMPQ 159

Query: 59  KPMV 48
           K ++
Sbjct: 160 KEVI 163


>U97592-4|AAB52872.1|  450|Caenorhabditis elegans Hypothetical
           protein C14A11.5 protein.
          Length = 450

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -1

Query: 320 VLAAHEPVHVEEYWRERTNPIRRFYRKPLDVLFAKLTPMLGEQRAAHYRY 171
           V+ AH  V   +YW++ T P    Y +   +LF K  P + +    + RY
Sbjct: 373 VVKAHI-VRKLDYWKKSTQPQAAHYTEMYQLLFEKCGPSISDVIMNYMRY 421


>L00665-1|AAA28148.1|  537|Caenorhabditis elegans protein (
           Caenorhabditis eleganstransposable element Tc4, complete
           cds. ).
          Length = 537

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +3

Query: 333 PLLTPSPFCISHTKTSFPFTGYATNYRHRFNTRCL-CHFFE**LHLVLEKK 482
           P LTP+ +CI H  T      Y T   H    RC  C  F    H V+ K+
Sbjct: 484 PFLTPAQYCIDHGDT---VICYHTGCNHLGFIRCARCKMFVCFNHFVVSKQ 531


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,776,259
Number of Sequences: 27780
Number of extensions: 356166
Number of successful extensions: 938
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)