Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_G08
(490 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac... 161 5e-41
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch... 161 5e-41
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17... 29 0.50
SPAC5D6.06c |||UDP-GlcNAc transferase associated protein Alg14|S... 27 2.0
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 26 2.7
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 26 3.5
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 8.1
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 25 8.1
>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 161 bits (391), Expect = 5e-41
Identities = 74/125 (59%), Positives = 95/125 (76%), Gaps = 1/125 (0%)
Frame = -1
Query: 457 LSSKMADQTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDK 278
+++++ Q+ER+FQKQP +F N KKG G R++KDVGLGFKTP EAI G Y+DK
Sbjct: 1 MATELVVQSERAFQKQPHIFQNAKKGAG-------RRWYKDVGLGFKTPAEAIYGEYVDK 53
Query: 277 KCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCLQ 98
KCPF G VSIRGRILTG V KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP +
Sbjct: 54 KCPFVGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR 113
Query: 97 -GRGD 86
GD
Sbjct: 114 INEGD 118
Score = 45.6 bits (103), Expect = 4e-06
Identities = 20/32 (62%), Positives = 26/32 (81%)
Frame = -2
Query: 105 AYRDVEIGDIVTIGECRPLXKTVRXNVLKVAK 10
A+R + GD+VT+G+CRPL KTVR NVL+V K
Sbjct: 111 AFR-INEGDVVTVGQCRPLSKTVRFNVLRVVK 141
>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 161 bits (391), Expect = 5e-41
Identities = 74/125 (59%), Positives = 95/125 (76%), Gaps = 1/125 (0%)
Frame = -1
Query: 457 LSSKMADQTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDK 278
+++++ Q+ER+FQKQP +F N KKG G R++KDVGLGFKTP EAI G Y+DK
Sbjct: 1 MATELVVQSERAFQKQPHIFQNAKKGAG-------RRWYKDVGLGFKTPAEAIYGEYVDK 53
Query: 277 KCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCLQ 98
KCPF G VSIRGRILTG V KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP +
Sbjct: 54 KCPFVGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR 113
Query: 97 -GRGD 86
GD
Sbjct: 114 INEGD 118
Score = 45.6 bits (103), Expect = 4e-06
Identities = 20/32 (62%), Positives = 26/32 (81%)
Frame = -2
Query: 105 AYRDVEIGDIVTIGECRPLXKTVRXNVLKVAK 10
A+R + GD+VT+G+CRPL KTVR NVL+V K
Sbjct: 111 AFR-INEGDVVTVGQCRPLSKTVRFNVLRVVK 141
>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 90
Score = 28.7 bits (61), Expect = 0.50
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 87 IGDIVTIGECRPLXKTVRXNVLKV 16
+GD VTI CRP T R ++K+
Sbjct: 51 VGDAVTIQPCRPRSATKRFEIIKI 74
>SPAC5D6.06c |||UDP-GlcNAc transferase associated protein
Alg14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 26.6 bits (56), Expect = 2.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 141 NGTGTCPYICRLAYRDVEIGDIVTI 67
NG GTC +IC L Y +G V I
Sbjct: 139 NGPGTCVFICLLGYLAKFLGKNVKI 163
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 26.2 bits (55), Expect = 2.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 318 LKPRPTSLWYLNGFLLRFTP 377
L P+PT+ W NGF + TP
Sbjct: 187 LPPKPTTPWRRNGFRSKTTP 206
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.8 bits (54), Expect = 3.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 93 VEIGDIVTIGECRPLXKTVRXNVLKVA 13
V +GDIVTI C + R +VL +A
Sbjct: 114 VRLGDIVTINPCPDIKYAERISVLPLA 140
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 24.6 bits (51), Expect = 8.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 376 GVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDK 278
G+K + +P Y VGLG K + I T +D+
Sbjct: 515 GIKEAIQPTMYLPGVGLGNKGSKIQINMTPVDR 547
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 24.6 bits (51), Expect = 8.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 372 TPIPFLRFRKTVGCFWNER 428
T F++ R TV CFW E+
Sbjct: 290 TVFSFVQVRGTVPCFWEEQ 308
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,930,900
Number of Sequences: 5004
Number of extensions: 37583
Number of successful extensions: 120
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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