Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_G08
(490 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0920 - 22603868-22603964,22604110-22604222,22604281-226044... 151 3e-37
04_04_1134 + 31137326-31137337,31137964-31138004,31138089-311381... 151 3e-37
04_04_0417 - 25052305-25052398,25052583-25052672,25052740-250529... 150 5e-37
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623... 141 2e-34
04_04_1135 + 31140032-31140043,31140552-31140592,31140680-311407... 139 1e-33
07_03_0919 - 22594980-22595111,22595398-22595427,22595522-225955... 137 4e-33
08_02_0383 - 16539472-16539633,16543044-16543205 33 0.16
03_05_0248 + 22348504-22348568,22349064-22349371,22349476-223500... 29 2.6
>07_03_0920 -
22603868-22603964,22604110-22604222,22604281-22604429,
22604732-22604832,22604917-22604957,22605584-22605595
Length = 170
Score = 151 bits (366), Expect = 3e-37
Identities = 73/126 (57%), Positives = 90/126 (71%), Gaps = 10/126 (7%)
Frame = -1
Query: 445 MADQTERSFQKQPTVFLNRKK-GIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCP 269
MA+QTE++F KQP VFL+ KK G G K + R+ K +GLGFKTPREAIEGTYIDKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
Query: 268 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYN---------RFEKRHRNMSVH 116
FTG VSIRGRI+ G KM RTI++RR+YLH++ KY R+EKRH N+ H
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQGANLPPCRYEKRHSNIPAH 120
Query: 115 LSPCLQ 98
+SPC +
Sbjct: 121 VSPCFR 126
Score = 40.7 bits (91), Expect = 6e-04
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = -2
Query: 93 VEIGDIVTIGECRPLXKTVRXNVLKV 16
V+ GD V IG+CRPL KTVR NVLKV
Sbjct: 127 VKEGDHVIIGQCRPLSKTVRFNVLKV 152
>04_04_1134 +
31137326-31137337,31137964-31138004,31138089-31138189,
31138489-31138637,31138696-31138808,31138954-31139050
Length = 170
Score = 151 bits (366), Expect = 3e-37
Identities = 73/126 (57%), Positives = 90/126 (71%), Gaps = 10/126 (7%)
Frame = -1
Query: 445 MADQTERSFQKQPTVFLNRKK-GIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCP 269
MA+QTE++F KQP VFL+ KK G G K + R+ K +GLGFKTPREAIEGTYIDKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
Query: 268 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYN---------RFEKRHRNMSVH 116
FTG VSIRGRI+ G KM RTI++RR+YLH++ KY R+EKRH N+ H
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQGANLPPCRYEKRHSNIPAH 120
Query: 115 LSPCLQ 98
+SPC +
Sbjct: 121 VSPCFR 126
Score = 40.7 bits (91), Expect = 6e-04
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = -2
Query: 93 VEIGDIVTIGECRPLXKTVRXNVLKV 16
V+ GD V IG+CRPL KTVR NVLKV
Sbjct: 127 VKEGDHVIIGQCRPLSKTVRFNVLKV 152
>04_04_0417 -
25052305-25052398,25052583-25052672,25052740-25052905,
25053547-25053647,25053735-25053775,25054170-25054181
Length = 167
Score = 150 bits (364), Expect = 5e-37
Identities = 73/124 (58%), Positives = 89/124 (71%), Gaps = 8/124 (6%)
Frame = -1
Query: 445 MADQTERSFQKQPTVFLNRKKGI-GVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCP 269
MA+QTER+F KQP VFL KK G K + R+ K++GLGFKTPREAIEGTYIDKKCP
Sbjct: 1 MAEQTERAFLKQPKVFLCPKKTTKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCP 60
Query: 268 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNR-------FEKRHRNMSVHLS 110
FTG VSIRGRI+ G KM RTI++RR+YLH++ KY R +EKRH N+ H+S
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQVNLVAGYEKRHSNIPAHIS 120
Query: 109 PCLQ 98
PC +
Sbjct: 121 PCFR 124
Score = 40.7 bits (91), Expect = 6e-04
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = -2
Query: 93 VEIGDIVTIGECRPLXKTVRXNVLKV 16
V+ GD V IG+CRPL KTVR NVLKV
Sbjct: 125 VKEGDHVIIGQCRPLSKTVRFNVLKV 150
>08_01_0706 -
6235817-6235988,6236028-6236338,6236421-6236627,
6236718-6236889,6236994-6237249,6238015-6238073,
6238693-6238782,6238869-6239013,6239598-6239712,
6240690-6240701
Length = 512
Score = 141 bits (342), Expect = 2e-34
Identities = 61/101 (60%), Positives = 76/101 (75%)
Frame = -1
Query: 400 FLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVV 221
F +K G G K + R+ K++GLGFKTPREAIEGTYIDKKCPFTG VSIRGRI+ G
Sbjct: 8 FSPKKSGKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTC 67
Query: 220 QKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCLQ 98
KM RTI++RR+YLH++ KY R+EKRH N+ H+SPC +
Sbjct: 68 HSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR 108
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = -2
Query: 93 VEIGDIVTIGECRPLXKTVRXNVLKV 16
V+ GD V IG+CRPL KTVR NV+KV
Sbjct: 109 VKEGDHVIIGQCRPLSKTVRFNVIKV 134
>04_04_1135 +
31140032-31140043,31140552-31140592,31140680-31140780,
31141113-31141419,31141565-31141661
Length = 185
Score = 139 bits (336), Expect = 1e-33
Identities = 73/141 (51%), Positives = 90/141 (63%), Gaps = 25/141 (17%)
Frame = -1
Query: 445 MADQTERSFQKQPTVFLNRKK-GIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCP 269
MA+QTE++F KQP VFL+ KK G G K + R+ K +GLGFKTPREAIEGTYIDKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
Query: 268 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYN--------------------- 152
FTG VSIRGRI+ G KM RTI++RR+YLH++ KY
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQVNNYGFYLCFFSFFFPISD 120
Query: 151 ---RFEKRHRNMSVHLSPCLQ 98
R+EKRH N+ H+SPC +
Sbjct: 121 LGCRYEKRHSNIPAHVSPCFR 141
Score = 40.7 bits (91), Expect = 6e-04
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = -2
Query: 93 VEIGDIVTIGECRPLXKTVRXNVLKV 16
V+ GD V IG+CRPL KTVR NVLKV
Sbjct: 142 VKEGDHVIIGQCRPLSKTVRFNVLKV 167
>07_03_0919 -
22594980-22595111,22595398-22595427,22595522-22595587,
22596021-22596107,22596868-22596921,22597696-22597762,
22598099-22598215,22598536-22598637,22598784-22598902,
22598966-22599049,22599220-22599354,22599470-22599505,
22599581-22599700,22600557-22600645,22601507-22601596,
22601629-22601802,22602135-22602235,22602323-22602363,
22602872-22602883
Length = 551
Score = 137 bits (332), Expect = 4e-33
Identities = 64/100 (64%), Positives = 77/100 (77%), Gaps = 1/100 (1%)
Frame = -1
Query: 445 MADQTERSFQKQPTVFLNRKK-GIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCP 269
MA+QTE++F KQP VFL+ KK G G K + R+ K +GLGFKTPREAIEGTYIDKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
Query: 268 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNR 149
FTG VSIRGRI+ G KM RTI++RR+YLH++ KY R
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQR 100
>08_02_0383 - 16539472-16539633,16543044-16543205
Length = 107
Score = 32.7 bits (71), Expect = 0.16
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -1
Query: 235 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVH 116
+ G+V KMQ+++V+ D L + YNR+ KR H
Sbjct: 4 VVGIVVSNKMQKSVVVAVDRLFHHKMYNRYVKRTSKFMAH 43
>03_05_0248 +
22348504-22348568,22349064-22349371,22349476-22350039,
22350082-22350128,22351244-22351715,22352349-22352611
Length = 572
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -1
Query: 301 IEGTYIDKKCPFTGNVSIRGRILTGVVQKM-KMQRTIVIRRDYLHYLPKY 155
+ GT PFTG++S G + + KM + +V +DYLH K+
Sbjct: 461 VRGTEDAPITPFTGDMSQSGDAIVAALMKMLAINPHLVTDKDYLHTAMKH 510
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,184,037
Number of Sequences: 37544
Number of extensions: 270711
Number of successful extensions: 661
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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