Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_G08
         (490 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)             173   5e-44
SB_46844| Best HMM Match : VWA (HMM E-Value=1.3e-31)                   33   0.13 
SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)         30   0.89 
SB_53154| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)                 27   6.3  
SB_35821| Best HMM Match : TUDOR (HMM E-Value=0)                       27   8.3  
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.3  

>SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score =  173 bits (422), Expect = 5e-44
 Identities = 81/128 (63%), Positives = 100/128 (78%), Gaps = 12/128 (9%)
 Frame = -1

Query: 445 MADQTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTP------------REA 302
           MA+QTER++QKQ  +F NRK+ +G    +K LR+ ++VGLGFKTP            REA
Sbjct: 1   MAEQTERAYQKQAPIFQNRKRVLGQVTKKKDLRFVRNVGLGFKTPKDVCNCTYLLPEREA 60

Query: 301 IEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMS 122
           IEGTYIDKKCPFTGNVSIRGRILTG+ + MKM+RTI+IRRDYLHY+ KYNRFEKRH+N++
Sbjct: 61  IEGTYIDKKCPFTGNVSIRGRILTGICRSMKMKRTIIIRRDYLHYIKKYNRFEKRHKNLA 120

Query: 121 VHLSPCLQ 98
            H SPC +
Sbjct: 121 AHCSPCFR 128



 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 23/37 (62%), Positives = 31/37 (83%)
 Frame = -2

Query: 114 CRLAYRDVEIGDIVTIGECRPLXKTVRXNVLKVAKGK 4
           C   +RD+ +GD++T+G+CRPL KTVR NVLKV+KGK
Sbjct: 123 CSPCFRDIALGDLITVGQCRPLSKTVRFNVLKVSKGK 159


>SB_46844| Best HMM Match : VWA (HMM E-Value=1.3e-31)
          Length = 332

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = -1

Query: 259 NVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCLQGRGDW* 80
           N++IR   +   + +  +Q  +  R DY+  +  ++   K HR++S  +   + G  DW 
Sbjct: 148 NIAIRAVGIGKEIDERALQTLVSNRNDYIFRVGSFDALSKLHRSLSQSICGTV-GAPDWL 206

Query: 79  YC 74
           YC
Sbjct: 207 YC 208


>SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)
          Length = 73

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 84  GDIVTIGECRPLXKTVRXNVLKVAK 10
           GD+V I ECRPL K  + NV ++ +
Sbjct: 29  GDVVRIKECRPLSKMKKFNVEEIVE 53


>SB_53154| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 335 ILVVSQRFSAPLHTNTFLAVQ 397
           ILV+ Q F  P HTN F+A Q
Sbjct: 78  ILVLVQPFPLPYHTNAFIAAQ 98


>SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)
          Length = 1399

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 294 PSIASRGVLKPRPTSLWYLNG 356
           P++  +GV  PRPT  WY  G
Sbjct: 654 PTLQCKGVGDPRPTITWYRKG 674


>SB_35821| Best HMM Match : TUDOR (HMM E-Value=0)
          Length = 754

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -1

Query: 385 KGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKK 275
           + + V + + PL  H D+ + +K P   +   Y+DK+
Sbjct: 271 EAVKVFKDKVPLNSHLDIKILYKNPEFLVVDLYVDKE 307


>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -1

Query: 385  KGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKK 275
            + + V + + PL  H D+ + +K P   +   Y+DK+
Sbjct: 1552 EAVKVFKDKVPLNSHLDIKILYKNPEFLVVDLYVDKE 1588


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,137,060
Number of Sequences: 59808
Number of extensions: 317648
Number of successful extensions: 897
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)