Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_G08
         (490 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical pr...   161   2e-40
Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AF026213-8|AAB71303.1|  226|Caenorhabditis elegans Hypothetical ...    28   4.2  
Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z14092-8|CAA78471.1|  208|Caenorhabditis elegans Hypothetical pr...    27   7.3  
X13689-1|CAA31979.1|  208|Caenorhabditis elegans protein ( Caeno...    27   7.3  
U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein.        27   7.3  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    27   7.3  
AC006633-6|AAK68378.4|  578|Caenorhabditis elegans Hypothetical ...    27   9.7  

>Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical
           protein F40F11.1 protein.
          Length = 155

 Score =  161 bits (391), Expect = 2e-40
 Identities = 75/116 (64%), Positives = 91/116 (78%)
 Frame = -1

Query: 445 MADQTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCPF 266
           M++QTER+F KQPTV LN K  I +  S+K  RY ++VGLGFK PR+A+EGTYIDKKCP+
Sbjct: 1   MSEQTERAFLKQPTVNLNNKARI-LAGSKKTPRYIREVGLGFKAPRDAVEGTYIDKKCPW 59

Query: 265 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCLQ 98
            GNV IRG ILTGVV K KM RTIV+RRDYLHY+ KY R+EKRH+N+  H SP  +
Sbjct: 60  AGNVPIRGMILTGVVLKNKMTRTIVVRRDYLHYIKKYRRYEKRHKNVPAHCSPAFR 115



 Score = 56.8 bits (131), Expect = 8e-09
 Identities = 26/38 (68%), Positives = 29/38 (76%)
 Frame = -2

Query: 123 PYICRLAYRDVEIGDIVTIGECRPLXKTVRXNVLKVAK 10
           P  C  A+RD+  GD+VTIGECRPL KTVR NVLKV K
Sbjct: 107 PAHCSPAFRDIHPGDLVTIGECRPLSKTVRFNVLKVNK 144


>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
 Frame = -1

Query: 460 SLSSKMADQTERSFQKQPTVFLNRKKG-IGVKRSRKPLRYHKDVGLGFKTPREAIEGTYI 284
           ++ SK+     R F+K+      +  G  G+K  R+  R    +    K  RE +     
Sbjct: 6   TVQSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTLEDK 65

Query: 283 DKKCPFTGNVSIRGRILTGVVQKMKMQRTIVI 188
           D K  F GN  +R  +  GV+ + KM+   V+
Sbjct: 66  DPKRLFEGNALLRRLVKIGVLDETKMKLDYVL 97


>AF026213-8|AAB71303.1|  226|Caenorhabditis elegans Hypothetical
           protein F08F1.3 protein.
          Length = 226

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +1

Query: 10  LCNFQNIXSH---CFGQRSAFADRYNITNLHVP 99
           L  F NI +H   CF   S  AD+Y I+ +H+P
Sbjct: 172 LVYFDNIRNHFPLCFVFDSKIADKYAISKVHLP 204


>Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical
           protein C27C12.4 protein.
          Length = 450

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 221 SEDEDAENYRDPPRLPSLPTQIQ*VRETAQEHVRTFVALL 102
           S++ED E+  DP  LP     +     +  E +R+ +ALL
Sbjct: 199 SQNEDIESSEDPLILPETENDVTLPASSVSEQLRSTIALL 238


>Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical
           protein F29D10.4 protein.
          Length = 1100

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -1

Query: 223 VQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCLQG 95
           V+ + ++  I +RR    Y   +++F +R+  +S    PC QG
Sbjct: 605 VEYLGLRENIRVRRAGFAYRRAFDKFAQRYAIVSPQTWPCFQG 647


>Z14092-8|CAA78471.1|  208|Caenorhabditis elegans Hypothetical
           protein R107.7 protein.
          Length = 208

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +2

Query: 242 AADRNVASEGTLLVNVGTLNRLTGSLETEAHILVVSQRFSAPLHT 376
           + D  +   G ++ ++  LN L GS ETE   + +       LHT
Sbjct: 55  SGDEEIVQSGAIIRHLARLNGLNGSNETETTFIDMFYEGLRDLHT 99


>X13689-1|CAA31979.1|  208|Caenorhabditis elegans protein (
           Caenorhabditis elegansgst-1 mRNA for glutathione
           S-transferase P  subunit. ).
          Length = 208

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +2

Query: 242 AADRNVASEGTLLVNVGTLNRLTGSLETEAHILVVSQRFSAPLHT 376
           + D  +   G ++ ++  LN L GS ETE   + +       LHT
Sbjct: 55  SGDEEIVQSGAIIRHLARLNGLNGSNETETTFIDMFYEGLRDLHT 99


>U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein.
          Length = 1036

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -1

Query: 223 VQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCLQG 95
           V+ + ++  I +RR    Y   +++F +R+  +S    PC QG
Sbjct: 542 VEYLGLRENIRVRRAGFAYRRAFDKFAQRYAIVSPQTWPCFQG 584


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = -3

Query: 416  KTTYSLSEPQERYWCEAEQKTVEIPQGCGPRFQDSP 309
            K TY +++P +   C  EQ        C P  Q  P
Sbjct: 1847 KCTYDITKPMDPITCSCEQNAAAHNTDCSPICQKQP 1882


>AC006633-6|AAK68378.4|  578|Caenorhabditis elegans Hypothetical
           protein F35B3.7 protein.
          Length = 578

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 416 KTTYSLSEPQERYW-CEAEQKTVEIP 342
           KT  S+  PQ R++ CE  QKTV++P
Sbjct: 109 KTHKSIVLPQPRFYTCERIQKTVKLP 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,091,435
Number of Sequences: 27780
Number of extensions: 229568
Number of successful extensions: 650
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)