Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_G08
         (490 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    23   1.7  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   3.1  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    22   3.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   3.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   5.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   5.3  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   7.0  

>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 157 YNRFEKRHRNMSVHLSPCLQGRGDW*YCNDRRMQTFXQNS 38
           YNR+  R R + +  + CL  R    +  +RRM+   +N+
Sbjct: 29  YNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENA 68


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 157 YNRFEKRHRNMSVHLSPCLQGRGDW*YCNDRRMQTFXQN 41
           YNR+  R R + +  + CL  R    +  +RRM+   +N
Sbjct: 291 YNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEN 329


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -1

Query: 64  RMQTFXQNSEXQCFESCKG 8
           +  T+  N E  C E+C G
Sbjct: 152 KCSTYQSNGEEVCLENCTG 170


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 63  RRSLQYHQSPRPCKQGDKCT 122
           RRS+Q     RPC +  +C+
Sbjct: 43  RRSIQQKIQYRPCTKNQQCS 62


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 63  RRSLQYHQSPRPCKQGDKCT 122
           RRS+Q     RPC +  +C+
Sbjct: 92  RRSIQQKIQYRPCTKNQQCS 111


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -1

Query: 358 KPLRYHKDVGLGFKTP 311
           +P+  HK   + F+TP
Sbjct: 274 QPVHVHKQTAIAFRTP 289


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -1

Query: 358 KPLRYHKDVGLGFKTP 311
           +P+  HK   + F+TP
Sbjct: 274 QPVHVHKQTAIAFRTP 289


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -1

Query: 469 CFFSLSSKMADQTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDV 332
           C++SL     D+ E+S       F NR+      R++  L  HK +
Sbjct: 17  CYYSLKRHFQDKHEQSDTLYVCEFCNRR-----YRTKNSLTTHKSL 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,294
Number of Sequences: 438
Number of extensions: 2705
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)