Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_G08
(490 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo... 165 2e-41
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A) 162 1e-40
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C) 157 5e-39
At2g45270.1 68415.m05635 glycoprotease M22 family protein simila... 31 0.42
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si... 30 0.73
At3g18880.1 68416.m02398 ribosomal protein S17 family protein si... 29 1.7
At3g61310.1 68416.m06861 DNA-binding family protein contains a A... 28 3.9
At5g17670.1 68418.m02071 expressed protein 27 5.1
At4g26980.1 68417.m03882 expressed protein 27 5.1
At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibit... 27 5.1
At4g02740.1 68417.m00374 F-box family protein contains Pfam PF00... 27 6.8
At5g60150.1 68418.m07540 expressed protein ; expression supporte... 27 9.0
At3g10360.1 68416.m01242 pumilio/Puf RNA-binding domain-containi... 27 9.0
>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
Length = 159
Score = 165 bits (400), Expect = 2e-41
Identities = 74/117 (63%), Positives = 93/117 (79%), Gaps = 1/117 (0%)
Frame = -1
Query: 445 MADQTERSFQKQPTVFLNRKK-GIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCP 269
MA+QTE++F KQP VFL+ KK G G + + R+ K++GLGFKTPREAIEGTYID+KCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCP 60
Query: 268 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCLQ 98
FTG VSIRGRIL+G KMQRTI++RRDYLH++ KY R+EKRH N+ H+SPC +
Sbjct: 61 FTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFR 117
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/26 (76%), Positives = 22/26 (84%)
Frame = -2
Query: 93 VEIGDIVTIGECRPLXKTVRXNVLKV 16
V+ GD VTIG+CRPL KTVR NVLKV
Sbjct: 118 VKEGDRVTIGQCRPLSKTVRFNVLKV 143
>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
Length = 160
Score = 162 bits (394), Expect = 1e-40
Identities = 72/117 (61%), Positives = 91/117 (77%), Gaps = 1/117 (0%)
Frame = -1
Query: 445 MADQTERSFQKQPTVFLNRKK-GIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCP 269
MA+QTE++F KQP VFL+ KK G G + + R+ K++GLGFKTPREAI+G Y+DKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60
Query: 268 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCLQ 98
FTG VSIRGRIL G KMQRTI++RRDYLH++ KY R+EKRH N+ H+SPC +
Sbjct: 61 FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFR 117
Score = 40.3 bits (90), Expect = 7e-04
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = -2
Query: 93 VEIGDIVTIGECRPLXKTVRXNVLKV 16
V+ GD + IG+CRPL KTVR NVLKV
Sbjct: 118 VKEGDHIIIGQCRPLSKTVRFNVLKV 143
>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
Length = 159
Score = 157 bits (380), Expect = 5e-39
Identities = 70/117 (59%), Positives = 89/117 (76%), Gaps = 1/117 (0%)
Frame = -1
Query: 445 MADQTERSFQKQPTVFLNRK-KGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCP 269
MA+QTE++F KQP VFL+ K G G + + R+ K++GLGFKTPREAI+G YID KCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60
Query: 268 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCLQ 98
FTG VSIRGRIL G KMQRTI++RR+YLH++ KY R+EKRH N+ H+SPC +
Sbjct: 61 FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFR 117
Score = 40.7 bits (91), Expect = 5e-04
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = -2
Query: 93 VEIGDIVTIGECRPLXKTVRXNVLKV 16
V+ GD V IG+CRPL KTVR NVLKV
Sbjct: 118 VKEGDHVIIGQCRPLSKTVRFNVLKV 143
>At2g45270.1 68415.m05635 glycoprotease M22 family protein similar
to SP|P36175 O-sialoglycoprotein endopeptidase (EC
3.4.24.57) (Glycoprotease) {Pasteurella haemolytica};
contains Pfam profile PF00814: Glycoprotease family
Length = 480
Score = 31.1 bits (67), Expect = 0.42
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Frame = -1
Query: 355 PLRYHKDVGL---GFKTP-REAIEGTYIDKKCP 269
P++YHKD G KT R AIE ID KCP
Sbjct: 285 PMKYHKDCNFSYAGLKTQVRLAIEAKEIDAKCP 317
>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
similar to 40S ribosomal protein S17 GI:1620985 from
[Nicotiana plumbaginifolia]
Length = 116
Score = 30.3 bits (65), Expect = 0.73
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 229 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVH 116
G V KMQ+++V+ D L + YNR+ KR H
Sbjct: 6 GTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAH 43
>At3g18880.1 68416.m02398 ribosomal protein S17 family protein
similar to 40S ribosomal protein S17 GB:Y08858 from
[Nicotiana plumbaginifolia]
Length = 105
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 241 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVH 116
+ + G V KMQ ++V+ D L + YNR+ KR H
Sbjct: 2 KAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAH 43
>At3g61310.1 68416.m06861 DNA-binding family protein contains a AT
hook motif (DNA binding motifs with a preference for A/T
rich regions), Pfam:PF02178
Length = 354
Score = 27.9 bits (59), Expect = 3.9
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +1
Query: 301 SPHGES*NRGPHPCGISTVFCSASHQYLSCGSERL*VVFGMSVPSDPPFCLTMKKSIGRP 480
SP G + N P+P G+ST F S S ++ G V + P ++K+ GRP
Sbjct: 49 SPFGSNPNPNPNPGGVSTGFVSPPLPVDSSPADSSAAAAGALV-APPSGDTSVKRKRGRP 107
Query: 481 NSF 489
+
Sbjct: 108 RKY 110
>At5g17670.1 68418.m02071 expressed protein
Length = 309
Score = 27.5 bits (58), Expect = 5.1
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 309 RGVLKPRPTSLWYLN 353
RG L+PRP WYLN
Sbjct: 86 RGTLRPRPVLDWYLN 100
>At4g26980.1 68417.m03882 expressed protein
Length = 343
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -1
Query: 319 KTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQK 215
+ PREA+ +D+ PF ++ + ++TGVVQK
Sbjct: 242 EVPREALPDVALDE--PFVKDIDPKTWVVTGVVQK 274
>At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibitor
family protein low similarity to pectinesterase from
Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum
SP|Q43143; contains Pfam profile PF04043: Plant
invertase/pectin methylesterase inhibitor
Length = 206
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -1
Query: 244 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRN 128
G+++ GVV+ +R + + R + L NRF RH++
Sbjct: 168 GKVMDGVVKSAIRRRVVHVARVTSNALALVNRFAARHKS 206
>At4g02740.1 68417.m00374 F-box family protein contains Pfam
PF00646: F-box domain; similar to F-box protein FBL2
(GI:6063090) [Homo sapiens]
Length = 645
Score = 27.1 bits (57), Expect = 6.8
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -1
Query: 337 DVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRIL--TGVVQKMKMQRT 197
D+G+GF ++G +D +G+ S+R R++ TG + + ++ T
Sbjct: 364 DMGMGFDVDYLLVQGQVLDSASKASGDDSVRDRLIDRTGKLAFLLLEST 412
>At5g60150.1 68418.m07540 expressed protein ; expression supported
by MPSS
Length = 1195
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 419 PKTTYSLSEPQERYWCEAEQKTVEIPQGC 333
P + S SE Q++Y C + + T ++ GC
Sbjct: 833 PFSEKSTSEKQKQYNCSSSENTSDVNDGC 861
>At3g10360.1 68416.m01242 pumilio/Puf RNA-binding domain-containing
protein similar to RNA binding protein PufA GB:AAD39751
[Dictyostelium discoideum] and similar to Pumilio
protein GB:A46221 [Drosophila sp.]
Length = 1003
Score = 26.6 bits (56), Expect = 9.0
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +2
Query: 260 ASEGTLLVNVG---TLNRLTGSLETEAHILVVSQRFSAPLHTNTFLAVQKD 403
++EG+ L G +LNRL + +E H V+ +S LHT + A D
Sbjct: 495 SAEGSHLTGDGDRQSLNRLINQVASELHSPVMDPHYSQYLHTASSTAAPID 545
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,365,656
Number of Sequences: 28952
Number of extensions: 210424
Number of successful extensions: 510
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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