Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_G06
(511 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 111 4e-25
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 110 5e-25
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 110 5e-25
03_02_0966 + 12783515-12783901 30 1.2
07_01_0115 + 851505-852368,852611-852730,853000-853020,853253-85... 29 2.2
01_06_1676 - 39084928-39085016,39085462-39085555,39085664-390857... 27 6.6
02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,290... 27 8.8
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 111 bits (266), Expect = 4e-25
Identities = 58/136 (42%), Positives = 75/136 (55%)
Frame = -1
Query: 493 RLFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHS 314
R FSYGLV+ VYDSG++F+PE+LD+ +DL KF +GV+ VA++SLAI YPTIA+APH
Sbjct: 184 RPFSYGLVITNVYDSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAAPHM 243
Query: 313 IANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKFXXXXXXXXXXXXXXXXXXXXXXXXX 134
NG+KN+L IKE++KDPSKF
Sbjct: 244 FLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKFAVAAPVAADSGAAAPSAAKEEEKKE 303
Query: 133 XXXXXSDDDMGFGLFD 86
SD D+G LFD
Sbjct: 304 EPEEESDGDLGMSLFD 319
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 110 bits (265), Expect = 5e-25
Identities = 52/95 (54%), Positives = 67/95 (70%)
Frame = -1
Query: 493 RLFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHS 314
R FSYGLV+ VYDSG++F+PE+LD+ EDL KF +GV+ VA++SLAI YPTIA+APH
Sbjct: 184 RPFSYGLVITNVYDSGSVFSPEVLDLTEEDLMEKFASGVSMVASVSLAISYPTIAAAPHM 243
Query: 313 IANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKF 209
NG+KN+L IKE++KDPSKF
Sbjct: 244 FLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKF 278
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 110 bits (265), Expect = 5e-25
Identities = 52/95 (54%), Positives = 67/95 (70%)
Frame = -1
Query: 493 RLFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHS 314
R FSYGLV+ VYDSG++F+PE+LD+ EDL KF +GV+ VA++SLAI YPTIA+APH
Sbjct: 184 RPFSYGLVITNVYDSGSVFSPEVLDLTEEDLMEKFASGVSMVASVSLAISYPTIAAAPHM 243
Query: 313 IANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKF 209
NG+KN+L IKE++KDPSKF
Sbjct: 244 FLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKF 278
>03_02_0966 + 12783515-12783901
Length = 128
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -1
Query: 385 AGVANVAALSLAIGYPTIASAPHSIANGFKNLL 287
AG+A VAA++ A+ P +A A +++ KN L
Sbjct: 67 AGIAAVAAVAAALAVPEVAEAAPALSPSLKNFL 99
>07_01_0115 +
851505-852368,852611-852730,853000-853020,853253-853369,
853466-853555,853730-853837,853897-853932,853933-854022
Length = 481
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -1
Query: 412 PEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFK 296
PE RA F AG A V A +P A+A +S GF+
Sbjct: 35 PEKKRASFAAGAAAVRAKVCDARWPASAAAANSAPYGFR 73
>01_06_1676 -
39084928-39085016,39085462-39085555,39085664-39085750,
39085941-39086073,39086451-39086724,39086863-39086989,
39087095-39087345,39087476-39087575
Length = 384
Score = 27.5 bits (58), Expect = 6.6
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = -1
Query: 484 SYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAAL 359
SYG V V DSGT A + LD + ++F VA V+ L
Sbjct: 83 SYGRVYYAVLDSGTKIAVKKLDSNENEPTSEFLTQVALVSRL 124
>02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,
2907650-2907790,2907870-2908043,2908577-2908851,
2909592-2909755,2910409-2910536,2910628-2910734,
2911747-2911880,2912266-2912441,2912530-2914257,
2915084-2915239,2915328-2915486,2915581-2915751,
2915931-2916047,2916417-2916473,2916565-2916680,
2916790-2916916,2917862-2917945
Length = 2056
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 239 DGGSFFKLNLCDSSDGQKVLETIGNGMRG*SNSWVSNSQRKSSY 370
DGG+ +K +DG E G G G SW ++ +K S+
Sbjct: 1507 DGGASWKKQSSTQNDGNSWKENKGRGSNG--GSWEKDNAQKGSW 1548
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,530,109
Number of Sequences: 37544
Number of extensions: 200648
Number of successful extensions: 497
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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