Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_G06
         (511 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15535| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_7011| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.9  
SB_27097| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_31798| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_7586| Best HMM Match : 7tm_1 (HMM E-Value=0.2)                      27   9.0  
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.0  
SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_15535| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 837

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +2

Query: 287 QKVLETIGNGMRG*SNSWVSNSQRKSSYISNSSLELGTEIFWFDVQNFR 433
           Q + +++  G+     SW+SN      +  + S++ G E F+ D+ + R
Sbjct: 545 QFIADSLPGGLSSRVLSWISNKVNVRKFFQHISVQFGREYFYSDLPSRR 593


>SB_7011| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/39 (33%), Positives = 15/39 (38%)
 Frame = -3

Query: 398 CQVPSWXXXXXXSFFGYWIPNYCFSPAFHCQWFQEPFGH 282
           C  P           GYW+ NYC     +CQ     FGH
Sbjct: 318 CNTPDSYIGIGAKQSGYWVGNYCMQ---YCQVKLAAFGH 353


>SB_27097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -2

Query: 486 SHMVLLLSRYMILELFLHLKFWTSNQKIS 400
           S +++++ RY+ +   LH + W S +K+S
Sbjct: 147 SMLLMMVDRYIAIAWGLHYRIWKSQRKVS 175


>SB_31798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 350 YWIPNYCFSPAFHCQWFQEPFGHR 279
           Y++ NY F  + +C++F + F HR
Sbjct: 6   YFVGNYSFVASENCKYFAQLFAHR 29


>SB_7586| Best HMM Match : 7tm_1 (HMM E-Value=0.2)
          Length = 362

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -2

Query: 477 VLLLSRYMILELFLHLKFWTSNQKISV 397
           +++L R +++   +  KFW + +K+SV
Sbjct: 61  MMMLDRLLVIRCGMRYKFWMTTEKVSV 87


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -1

Query: 115 DDDMGFGLFD 86
           DDDMGFGLFD
Sbjct: 753 DDDMGFGLFD 762


>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -1

Query: 115 DDDMGFGLFD 86
           DDDMGFGLFD
Sbjct: 101 DDDMGFGLFD 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,737,584
Number of Sequences: 59808
Number of extensions: 210671
Number of successful extensions: 474
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)