Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_G06
(511 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M25772-1|AAA53372.1| 317|Drosophila melanogaster DNA repair pro... 144 5e-35
BT021447-1|AAX33595.1| 317|Drosophila melanogaster GH01513p pro... 144 5e-35
AY075528-1|AAL68335.1| 317|Drosophila melanogaster RE74511p pro... 144 5e-35
AE014296-3653|AAF51807.1| 317|Drosophila melanogaster CG7490-PA... 144 5e-35
X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein ( Dros... 32 0.52
AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependen... 32 0.52
AY119554-1|AAM50208.1| 1054|Drosophila melanogaster GH28348p pro... 28 8.4
AE014134-1654|AAF52786.2| 1054|Drosophila melanogaster CG4405-PB... 28 8.4
AE014134-1653|AAF52787.2| 1054|Drosophila melanogaster CG4405-PA... 28 8.4
AB069908-1|BAB62875.1| 1054|Drosophila melanogaster junctophilin... 28 8.4
>M25772-1|AAA53372.1| 317|Drosophila melanogaster DNA repair
protein protein.
Length = 317
Score = 144 bits (350), Expect = 5e-35
Identities = 77/135 (57%), Positives = 85/135 (62%), Gaps = 1/135 (0%)
Frame = -1
Query: 487 FSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIA 308
FSYGL+V QVYDSG+IF+PEILDIKPEDLRAKFQ GVAN+AA+ L++GYPTIASAPHSIA
Sbjct: 183 FSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIA 242
Query: 307 NGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKF-XXXXXXXXXXXXXXXXXXXXXXXXXX 131
NGFKNLL IKE+IKDPSKF
Sbjct: 243 NGFKNLLAIAATTEVEFKEATTIKEYIKDPSKFAAAASASAAPAAGGATEKKEEAKKPES 302
Query: 130 XXXXSDDDMGFGLFD 86
DDDMGFGLFD
Sbjct: 303 ESEEEDDDMGFGLFD 317
>BT021447-1|AAX33595.1| 317|Drosophila melanogaster GH01513p
protein.
Length = 317
Score = 144 bits (350), Expect = 5e-35
Identities = 77/135 (57%), Positives = 85/135 (62%), Gaps = 1/135 (0%)
Frame = -1
Query: 487 FSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIA 308
FSYGL+V QVYDSG+IF+PEILDIKPEDLRAKFQ GVAN+AA+ L++GYPTIASAPHSIA
Sbjct: 183 FSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIA 242
Query: 307 NGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKF-XXXXXXXXXXXXXXXXXXXXXXXXXX 131
NGFKNLL IKE+IKDPSKF
Sbjct: 243 NGFKNLLAIAATTEVEFKEATTIKEYIKDPSKFAAAASASAAPAAGGATEKKEEAKKPES 302
Query: 130 XXXXSDDDMGFGLFD 86
DDDMGFGLFD
Sbjct: 303 ESEEEDDDMGFGLFD 317
>AY075528-1|AAL68335.1| 317|Drosophila melanogaster RE74511p
protein.
Length = 317
Score = 144 bits (350), Expect = 5e-35
Identities = 77/135 (57%), Positives = 85/135 (62%), Gaps = 1/135 (0%)
Frame = -1
Query: 487 FSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIA 308
FSYGL+V QVYDSG+IF+PEILDIKPEDLRAKFQ GVAN+AA+ L++GYPTIASAPHSIA
Sbjct: 183 FSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIA 242
Query: 307 NGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKF-XXXXXXXXXXXXXXXXXXXXXXXXXX 131
NGFKNLL IKE+IKDPSKF
Sbjct: 243 NGFKNLLAIAATTEVEFKEATTIKEYIKDPSKFAAAASASAAPAAGGATEKKEEAKKPES 302
Query: 130 XXXXSDDDMGFGLFD 86
DDDMGFGLFD
Sbjct: 303 ESEEEDDDMGFGLFD 317
>AE014296-3653|AAF51807.1| 317|Drosophila melanogaster CG7490-PA
protein.
Length = 317
Score = 144 bits (350), Expect = 5e-35
Identities = 77/135 (57%), Positives = 85/135 (62%), Gaps = 1/135 (0%)
Frame = -1
Query: 487 FSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIA 308
FSYGL+V QVYDSG+IF+PEILDIKPEDLRAKFQ GVAN+AA+ L++GYPTIASAPHSIA
Sbjct: 183 FSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIA 242
Query: 307 NGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKF-XXXXXXXXXXXXXXXXXXXXXXXXXX 131
NGFKNLL IKE+IKDPSKF
Sbjct: 243 NGFKNLLAIAATTEVEFKEATTIKEYIKDPSKFAAAASASAAPAAGGATEKKEEAKKPES 302
Query: 130 XXXXSDDDMGFGLFD 86
DDDMGFGLFD
Sbjct: 303 ESEEEDDDMGFGLFD 317
>X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein (
Drosophila retrotransposon412 genome. ).
Length = 1237
Score = 31.9 bits (69), Expect = 0.52
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = -1
Query: 508 MNSAGRLFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIA 329
+N + LF +G + YD G ++ ILD+ R + QAG+ +++ + +A P
Sbjct: 799 LNDSICLFKHGKKIIARYDVGDLYTNGILDLDQFLQRLELQAGIYDISQIKMA---PWKK 855
Query: 328 SAPHSIANGFKNL 290
H + FKN+
Sbjct: 856 IFEHVSIDKFKNM 868
>AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependent
DNA polymerase protein.
Length = 1000
Score = 31.9 bits (69), Expect = 0.52
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = -1
Query: 508 MNSAGRLFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIA 329
+N + LF +G + YD G ++ ILD+ R + QAG+ +++ + +A P
Sbjct: 562 LNDSICLFKHGKKIIARYDVGDLYTNGILDLDQFLQRLELQAGIYDISQIKMA---PWKK 618
Query: 328 SAPHSIANGFKNL 290
H + FKN+
Sbjct: 619 IFEHVSIDKFKNM 631
>AY119554-1|AAM50208.1| 1054|Drosophila melanogaster GH28348p
protein.
Length = 1054
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 283 WPKGS*NHWQWNAGLKQ*LGIQ*PKKEQLH*QLQLGTWHGD 405
WP GS QW G + LG+ EQ+ Q+ G W D
Sbjct: 100 WPSGSHYEGQWQNGRRHGLGV-----EQIGRQIYRGEWSKD 135
>AE014134-1654|AAF52786.2| 1054|Drosophila melanogaster CG4405-PB,
isoform B protein.
Length = 1054
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 283 WPKGS*NHWQWNAGLKQ*LGIQ*PKKEQLH*QLQLGTWHGD 405
WP GS QW G + LG+ EQ+ Q+ G W D
Sbjct: 100 WPSGSHYEGQWQNGRRHGLGV-----EQIGRQIYRGEWSKD 135
>AE014134-1653|AAF52787.2| 1054|Drosophila melanogaster CG4405-PA,
isoform A protein.
Length = 1054
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 283 WPKGS*NHWQWNAGLKQ*LGIQ*PKKEQLH*QLQLGTWHGD 405
WP GS QW G + LG+ EQ+ Q+ G W D
Sbjct: 100 WPSGSHYEGQWQNGRRHGLGV-----EQIGRQIYRGEWSKD 135
>AB069908-1|BAB62875.1| 1054|Drosophila melanogaster junctophilin
protein.
Length = 1054
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 283 WPKGS*NHWQWNAGLKQ*LGIQ*PKKEQLH*QLQLGTWHGD 405
WP GS QW G + LG+ EQ+ Q+ G W D
Sbjct: 100 WPSGSHYEGQWQNGRRHGLGV-----EQIGRQIYRGEWSKD 135
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,732,342
Number of Sequences: 53049
Number of extensions: 324171
Number of successful extensions: 666
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1846255872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -