Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_G06
         (511 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   112   1e-25
U88182-2|AAB42308.4|  961|Caenorhabditis elegans Patched related...    28   4.5  
Z70686-2|CAA94610.1|  570|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...    27   7.9  
U20142-2|AAB60235.1|  570|Caenorhabditis elegans SPE-26 protein ...    27   7.9  
AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    27   7.9  
AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...    27   7.9  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  112 bits (270), Expect = 1e-25
 Identities = 61/134 (45%), Positives = 76/134 (56%)
 Frame = -1

Query: 487 FSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIA 308
           FSYGLVV+QVYD GT++ PE+LD+  E+LR +F +GV NVA++SLA+ YPT+AS  HS+A
Sbjct: 183 FSYGLVVRQVYDDGTLYTPEVLDMTTEELRKRFLSGVRNVASVSLAVNYPTLASVAHSLA 242

Query: 307 NGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXX 128
           NG +N+L               IK FI DPSKF                           
Sbjct: 243 NGLQNMLGVAAVTDVSFKEAETIKAFIADPSKF----AAAAPAAAAAPAAAAPAAKKEEP 298

Query: 127 XXXSDDDMGFGLFD 86
              SDDDMGFGLFD
Sbjct: 299 KEESDDDMGFGLFD 312


>U88182-2|AAB42308.4|  961|Caenorhabditis elegans Patched related
           family protein 5 protein.
          Length = 961

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 101 LWSFRLEPVRSNSLSQAAGVDVHMAAGLGLHF 6
           LWSF L+PV   ++  + G+ V   A +  HF
Sbjct: 796 LWSFDLDPVVMAAVLMSIGLSVDFIAHVAYHF 827


>Z70686-2|CAA94610.1|  570|Caenorhabditis elegans Hypothetical
           protein R10H10.2 protein.
          Length = 570

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 344 SNSQRKSSYISNSSLELGTEIFWFDVQNFR 433
           +N     +YISNSS+     I+ F  QNFR
Sbjct: 322 NNMMEPRNYISNSSVVYDGRIYVFGGQNFR 351


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -1

Query: 115 DDDMGFGLFD 86
           DDDMGFGLFD
Sbjct: 98  DDDMGFGLFD 107


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -1

Query: 115 DDDMGFGLFD 86
           DDDMGFGLFD
Sbjct: 102 DDDMGFGLFD 111


>U20142-2|AAB60235.1|  570|Caenorhabditis elegans SPE-26 protein
           protein.
          Length = 570

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 344 SNSQRKSSYISNSSLELGTEIFWFDVQNFR 433
           +N     +YISNSS+     I+ F  QNFR
Sbjct: 322 NNMMEPRNYISNSSVVYDGRIYVFGGQNFR 351


>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -1

Query: 115 DDDMGFGLFD 86
           DDDMGFGLFD
Sbjct: 101 DDDMGFGLFD 110


>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -1

Query: 115 DDDMGFGLFD 86
           DDDMGFGLFD
Sbjct: 102 DDDMGFGLFD 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,337,052
Number of Sequences: 27780
Number of extensions: 157076
Number of successful extensions: 435
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)