Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_G06
         (511 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   7.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.4  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   7.4  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   7.4  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   9.8  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 371 ISNSSLELGTEIFWFDVQNFRCKNSSRIIYLLNNK 475
           +SN   ++    F FD  NFR  N++    +LN +
Sbjct: 381 LSNKMQKMVNNDFNFDDVNFRIMNANVNELILNTR 415


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 405 SSGLMSRISGAKIVPESYTCLTTRPYENNR 494
           SSG +S +   K V +  T  ++ PY+ +R
Sbjct: 153 SSGSVSCVPSVKHVAKCATDFSSWPYDTHR 182


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 371 ISNSSLELGTEIFWFDVQNFRCKNSSRIIYLLNNK 475
           +SN   ++    F FD  NFR  N++    +LN +
Sbjct: 381 LSNKMQKMVNNDFNFDDVNFRIMNANVNELILNTR 415


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 371 ISNSSLELGTEIFWFDVQNFRCKNSSRIIYLLNNK 475
           +SN   ++    F FD  NFR  N++    +LN +
Sbjct: 381 LSNKMQKMVNNDFNFDDVNFRIMNANVNELILNTR 415


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 374 SNSSLELGTEIFWFDVQNFRCK 439
           S+  +E  + I+WF V+   CK
Sbjct: 367 SDEEIEKLSTIYWFTVEFGLCK 388


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,657
Number of Sequences: 438
Number of extensions: 1997
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)