Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_G06
         (511 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)      104   4e-23
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)...   101   4e-22
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)...    99   9e-22
At5g60150.1 68418.m07540 expressed protein ; expression supporte...    27   7.3  
At5g45595.1 68418.m05602 hypothetical protein                          27   7.3  
At5g56870.1 68418.m07097 beta-galactosidase, putative / lactase,...    27   9.7  

>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 
          Length = 317

 Score =  104 bits (249), Expect = 4e-23
 Identities = 48/95 (50%), Positives = 65/95 (68%)
 Frame = -1

Query: 493 RLFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHS 314
           R FSYGLVV+ VYD+G++F PE+L++  +DL  KF AGV+ + ALSLAI YPT+A+APH 
Sbjct: 184 RPFSYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAAPHM 243

Query: 313 IANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKF 209
             N +KN+L               +KEF+KDP+KF
Sbjct: 244 FLNAYKNVLAVALATEYSFPQAENVKEFLKDPTKF 278


>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
           similar to 60S acidic ribosomal protein P0 GI:2088654
           [Arabidopsis thaliana]
          Length = 323

 Score =  101 bits (241), Expect = 4e-22
 Identities = 45/95 (47%), Positives = 64/95 (67%)
 Frame = -1

Query: 493 RLFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHS 314
           R FSYGLVV+ VYD+G++F+PE+LD+  + L  KF +G++ V +L+LA+ YPT+A+APH 
Sbjct: 183 RPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHM 242

Query: 313 IANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKF 209
             N +KN L               +KEF+KDPSKF
Sbjct: 243 FINAYKNALAIAVATDYTFPQAEKVKEFLKDPSKF 277


>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
           similar to putative 60S acidic ribosomal protein P0
           GB:P50346 [Glycine max]
          Length = 320

 Score =   99 bits (238), Expect = 9e-22
 Identities = 44/95 (46%), Positives = 64/95 (67%)
 Frame = -1

Query: 493 RLFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHS 314
           R FSYGLVV+ VYD+G++F+PE+LD+  + L  KF +G++ V +L+LA+ YPT+A+APH 
Sbjct: 183 RPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHM 242

Query: 313 IANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKF 209
             N +KN L               +KE++KDPSKF
Sbjct: 243 FINAYKNALAIAVATEYTFPQAEKVKEYLKDPSKF 277


>At5g60150.1 68418.m07540 expressed protein ; expression supported
           by MPSS
          Length = 1195

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +2

Query: 302 TIGNGMRG*SNSWVSNSQRKSSYISNSSLELGTEIFWFDVQNFRCKNSSRI 454
           T+GN M+  + S +     + + + NS   LG+E F  +  + + K  S +
Sbjct: 214 TVGNNMKRTTQSPIKAKNSQPTQLKNSQRSLGSESFSKNTSSTKSKTKSSL 264


>At5g45595.1 68418.m05602 hypothetical protein
          Length = 143

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 251 FFKLNLCDSSDGQKVLETIGNGMRG*SNSWVSN-SQRKSSYISNSSLEL 394
           +FKLN   +S G   L T G  +R    +WV +   R SS +  S+L L
Sbjct: 80  WFKLNTDGASRGNPGLATAGGVIRDAVGNWVQDGDMRYSSLVVPSTLVL 128


>At5g56870.1 68418.m07097 beta-galactosidase, putative / lactase,
           putative similar to beta-galactosidase precursor
           GI:3869280 from [Carica papaya]
          Length = 724

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 400 RAKFQAGVANVAALSLAIGYPTIAS 326
           + K  AGV  +A LS+A+G P + +
Sbjct: 528 KIKLHAGVNKIALLSVAVGLPNVGT 552


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,999,759
Number of Sequences: 28952
Number of extensions: 150778
Number of successful extensions: 382
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)