Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_G05
         (732 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13169| Best HMM Match : Band_7 (HMM E-Value=1.4013e-45)            174   7e-44
SB_8661| Best HMM Match : Band_7 (HMM E-Value=3.7e-16)                162   2e-40
SB_33521| Best HMM Match : Utp14 (HMM E-Value=0.48)                    32   0.42 
SB_10636| Best HMM Match : Band_7 (HMM E-Value=1.1e-05)                32   0.55 
SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)                    28   9.0  
SB_38389| Best HMM Match : PspA_IM30 (HMM E-Value=0.87)                28   9.0  
SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 28   9.0  

>SB_13169| Best HMM Match : Band_7 (HMM E-Value=1.4013e-45)
          Length = 242

 Score =  174 bits (423), Expect = 7e-44
 Identities = 104/182 (57%), Positives = 126/182 (69%)
 Frame = -3

Query: 730 ITLRILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQK 551
           ITLRIL+RP P  LP+IY  LG DYDERVLPSIT+EVLKAVVAQFDAGELITQRE+VSQK
Sbjct: 90  ITLRILYRPQPQVLPKIYMNLGEDYDERVLPSITTEVLKAVVAQFDAGELITQREMVSQK 149

Query: 550 VNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQQKKA 371
           V + LTERA+ FGL+LDDIS+                  A+Q+ + A   V  AE   + 
Sbjct: 150 VQEDLTERASSFGLVLDDISL------------------AEQQKKAA---VISAEGDARG 188

Query: 370 AVIAAEGDAQAAVLLAKSFGSAGEGLVELRRIEAAEDIAYQLAKSRNVTYLPHGQNVLLN 191
           A            LLA++F  AGEGLVELR+IEA+E+IA ++++SRNV YLP GQ +LLN
Sbjct: 189 A-----------ALLAQAFKEAGEGLVELRKIEASEEIAERMSRSRNVAYLPGGQKMLLN 237

Query: 190 LP 185
           LP
Sbjct: 238 LP 239


>SB_8661| Best HMM Match : Band_7 (HMM E-Value=3.7e-16)
          Length = 500

 Score =  162 bits (394), Expect = 2e-40
 Identities = 79/136 (58%), Positives = 108/136 (79%)
 Frame = -3

Query: 730 ITLRILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQK 551
           I LR+L RP  ++LP +Y  LG+D+DERVLPSI +EVLK+VVAQF+A +LIT R+ VS  
Sbjct: 363 IGLRVLARPEANKLPPMYRKLGLDFDERVLPSIMNEVLKSVVAQFNASQLITMRQQVSLL 422

Query: 550 VNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQQKKA 371
           +   L ERA  F +ILDD+SIT L+FGKE+T A+E KQVAQQEA++A+F+VEKA Q+++ 
Sbjct: 423 IRRQLMERARDFYIILDDVSITDLSFGKEYTSAIEAKQVAQQEAQRAQFIVEKAIQERQQ 482

Query: 370 AVIAAEGDAQAAVLLA 323
            ++ AEG+AQAA L++
Sbjct: 483 KIVQAEGEAQAAKLIS 498


>SB_33521| Best HMM Match : Utp14 (HMM E-Value=0.48)
          Length = 947

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
 Frame = -3

Query: 637 SITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERA-AQFGLILDDISITHLTFGKEF 461
           S+  +V K V++  D    + QR+    ++     E+A  +   + DD+    +   K  
Sbjct: 297 SVWRDVAKVVMSVRD----LVQRKFEEDQITQKEKEKAETKLPTLPDDV----MALEKSA 348

Query: 460 TQAVELKQVAQQEAEKARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELR 281
           +QA   ++ AQ  A++ARF  EKA+   K A + AE   +         G A  G+   R
Sbjct: 349 SQA---RKDAQTAAQQARFAAEKAQAASKRAGMLAEMAMRGDKDKDLQAGEARSGVSTRR 405

Query: 280 RIEAAEDIAYQLAKSR 233
           R+   ++++ + A  R
Sbjct: 406 RVLNEDEVSEKGAGGR 421


>SB_10636| Best HMM Match : Band_7 (HMM E-Value=1.1e-05)
          Length = 152

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 16/67 (23%), Positives = 38/67 (56%)
 Frame = -3

Query: 586 ELITQREIVSQKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKAR 407
           E+++QR+ +SQ +  SL E    +G+ ++ I +  +   ++  +A+  +  A +EA +A+
Sbjct: 32  EILSQRDEISQTMQSSLDEATDPWGVKVERIEVKDVRLPQQLQRAMAAEAEATREA-RAK 90

Query: 406 FLVEKAE 386
            +  + E
Sbjct: 91  IIAAEGE 97


>SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 654

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 308 CWRRSC*TSSY*SGRGHCLSTSEITQCHLSSAWT 207
           C + SC    Y SGRG C++     +C  +S WT
Sbjct: 39  CSQNSCADLDYCSGRGSCVNA---YRCECNSGWT 69


>SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 2322

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -3

Query: 598 FDAGELITQREIVSQKVNDSLTERAAQFGLILD--DISITHLTFGKEFTQAVELKQVAQQ 425
           +D   +  QR+   + +ND L ++  +F    D  +  +T    G+E  +A+ELK  +QQ
Sbjct: 132 YDVPMVERQRQETKEMMNDFLKQKP-KFASARDLGNKLVTEPCLGREEREALELKMTSQQ 190

Query: 424 E 422
           E
Sbjct: 191 E 191


>SB_38389| Best HMM Match : PspA_IM30 (HMM E-Value=0.87)
          Length = 339

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
 Frame = -3

Query: 454 AVELKQVAQQEAEKARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRRI 275
           A E +  A Q   +AR  VE   QQ    V A      AAVLLA+     GE + +L R 
Sbjct: 100 ASEAQARANQSLIRARE-VEILSQQCINNVSAVNQSTHAAVLLARDAAGHGEEVTKLARQ 158

Query: 274 EAAEDIAYQLAKSRN-VTYLPHGQNVLLNLPTQN*IR 167
           E  E I     ++RN +      ++++ N   ++ IR
Sbjct: 159 E-QEVINETHIRARNLIAQTKSAEDLIANQTVRDFIR 194


>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1706

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
 Frame = -3

Query: 454  AVELKQVAQQEAEKARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRRI 275
            A E +  A Q   +AR  VE   QQ    V A      AAVLLA+     GE + +L R 
Sbjct: 1479 ASEAQARANQSLIRARE-VEILSQQCINNVSAVNQSTHAAVLLARDAAGHGEEVTKLARR 1537

Query: 274  EAAEDIAYQLAKSRN-VTYLPHGQNVLLNLPTQN*IR 167
            E  E I     ++RN +      ++++ N   ++ IR
Sbjct: 1538 E-QEVINETHIRARNLIAQTKSAEDLIANQTVRDFIR 1573


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,305,147
Number of Sequences: 59808
Number of extensions: 313231
Number of successful extensions: 816
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)