Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_G03
(582 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ... 30 1.4
AF139520-1|AAD33830.1| 176|Caenorhabditis elegans warthog prote... 29 1.8
AF000298-2|AAC48258.1| 176|Caenorhabditis elegans Warthog (hedg... 29 1.8
Z82084-6|CAJ85781.1| 156|Caenorhabditis elegans Hypothetical pr... 27 7.4
U41007-12|AAA82272.1| 485|Caenorhabditis elegans Nucleoside tri... 27 7.4
U39997-6|AAN60517.1| 942|Caenorhabditis elegans Clear protein 1... 27 7.4
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1... 27 7.4
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1... 27 7.4
AF047881-1|AAC27552.1| 942|Caenorhabditis elegans truncated CLR... 27 7.4
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein. 27 7.4
>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
protein F39C12.1 protein.
Length = 5105
Score = 29.9 bits (64), Expect = 1.4
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = -2
Query: 551 QQERTKTIKNEIDHRCSSRPCGYRHRCPPY-RGLP*DRSV*IRRQPRWSLQLQFRDFQRH 375
Q ER K +KN++ +R SSR G H+ P + R LP D R+ R + Q +F+ +
Sbjct: 2525 QLER-KFLKNKVHNRRSSRAPGIHHQRPLHPRWLPTDHET-DRKDSRAASQFRFQHMRSK 2582
Query: 374 R 372
R
Sbjct: 2583 R 2583
>AF139520-1|AAD33830.1| 176|Caenorhabditis elegans warthog protein
WRT-5 protein.
Length = 176
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 346 PSAHQFRYARCRWKSRNCSCKLHRGWRRIQTERS*GS 456
PS H+ +YA C ++ + +C + W T+ S GS
Sbjct: 48 PSCHEKKYAECPERATSTTCSTNSSWVGGVTQHSDGS 84
>AF000298-2|AAC48258.1| 176|Caenorhabditis elegans Warthog
(hedgehog-like family)protein 5, isoform a protein.
Length = 176
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 346 PSAHQFRYARCRWKSRNCSCKLHRGWRRIQTERS*GS 456
PS H+ +YA C ++ + +C + W T+ S GS
Sbjct: 48 PSCHEKKYAECPERATSTTCSTNSSWVGGVTQHSDGS 84
>Z82084-6|CAJ85781.1| 156|Caenorhabditis elegans Hypothetical
protein ZK1053.7 protein.
Length = 156
Score = 27.5 bits (58), Expect = 7.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 304 VRGSYSYTNTDGKPETITYF 245
++ +YSY N DG P + TY+
Sbjct: 112 IKDTYSYDNVDGTPISCTYY 131
>U41007-12|AAA82272.1| 485|Caenorhabditis elegans Nucleoside
triphosphatase protein 1 protein.
Length = 485
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 285 TRTLTANLKPLRTSLTRLDTMLQGESIPQVASAT 184
TR LKPL LT +DT++ ES P V T
Sbjct: 36 TRLFVYTLKPLSGGLTNIDTLIH-ESEPVVKKVT 68
>U39997-6|AAN60517.1| 942|Caenorhabditis elegans Clear protein 1,
isoform c protein.
Length = 942
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -1
Query: 276 LTANLKPLRTSLTRLDTMLQGESIPQVASATS*TSKXPWIDLS 148
+TAN KPLR + T L T + VA A TS ID++
Sbjct: 144 VTANQKPLRLNSTLLPTKCDKRDLAVVARAHPSTSVSKGIDVT 186
>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
isoform a protein.
Length = 1409
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -1
Query: 276 LTANLKPLRTSLTRLDTMLQGESIPQVASATS*TSKXPWIDLS 148
+TAN KPLR + T L T + VA A TS ID++
Sbjct: 144 VTANQKPLRLNSTLLPTKCDKRDLAVVARAHPSTSVSKGIDVT 186
>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
isoform b protein.
Length = 1444
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -1
Query: 276 LTANLKPLRTSLTRLDTMLQGESIPQVASATS*TSKXPWIDLS 148
+TAN KPLR + T L T + VA A TS ID++
Sbjct: 144 VTANQKPLRLNSTLLPTKCDKRDLAVVARAHPSTSVSKGIDVT 186
>AF047881-1|AAC27552.1| 942|Caenorhabditis elegans truncated CLR-1
protein.
Length = 942
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -1
Query: 276 LTANLKPLRTSLTRLDTMLQGESIPQVASATS*TSKXPWIDLS 148
+TAN KPLR + T L T + VA A TS ID++
Sbjct: 144 VTANQKPLRLNSTLLPTKCDKRDLAVVARAHPSTSVSKGIDVT 186
>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
Length = 1409
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -1
Query: 276 LTANLKPLRTSLTRLDTMLQGESIPQVASATS*TSKXPWIDLS 148
+TAN KPLR + T L T + VA A TS ID++
Sbjct: 144 VTANQKPLRLNSTLLPTKCDKRDLAVVARAHPSTSVSKGIDVT 186
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,053,800
Number of Sequences: 27780
Number of extensions: 223069
Number of successful extensions: 626
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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