Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_G01
(780 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 34 0.026
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.7
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 27 2.3
SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, An... 27 4.0
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 4.0
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces... 26 5.3
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 5.3
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 26 5.3
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 26 5.3
SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual 26 7.0
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 25 9.2
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 25 9.2
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 33.9 bits (74), Expect = 0.026
Identities = 41/182 (22%), Positives = 82/182 (45%), Gaps = 9/182 (4%)
Frame = +3
Query: 246 TNSNFNTSEG*LTKLTSVCRGSGCGEVFSTLAKAASLILGSG*GPMLATVQTLLTPALNA 425
T+S +TS + +S+ S S+ + ++ + S + + ++ + ++
Sbjct: 237 TSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSS 296
Query: 426 *LEKSRLSNGLEDTTLGAFFFSSTLAFLYLSTLSAYSNRTAYDNSQLSCSFSVPSAAGL- 602
+ S+ + ++ + FSSTL+ +S+ S++S+ +S +S S S PS++
Sbjct: 297 SSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFS 356
Query: 603 --------TKSF*YVLYASFQKSESIFLNPSRSSIX*CLIXXSSNHSTTLLYSFSSSQLK 758
+ SF + +S S S + S SS SS+HS++L SSS K
Sbjct: 357 STTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSS---SRPASSSSHSSSLSSHKSSSSSK 413
Query: 759 NS 764
+S
Sbjct: 414 SS 415
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.9 bits (59), Expect = 1.7
Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 1/177 (0%)
Frame = +3
Query: 237 RS*TNSNFNTSEG*LTKLTSVCRGSGCGEVFSTLAKAASLILGSG*GPMLATVQTLLTPA 416
R+ T+ N+NTS + LTS S S+LA +++ S P +++ T +
Sbjct: 58 RATTSYNYNTSSASSSSLTSSSAASSSLTSSSSLASSSTNSTTSA-SPTSSSL-TSSSAT 115
Query: 417 LNA*LEKSRLSNGLEDTTL-GAFFFSSTLAFLYLSTLSAYSNRTAYDNSQLSCSFSVPSA 593
++ S S+ L +++ + SS++ L++ S S+ A ++ + S + S+
Sbjct: 116 SSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSS 175
Query: 594 AGLTKSF*YVLYASFQKSESIFLNPSRSSIX*CLIXXSSNHSTTLLYSFSSSQLKNS 764
A T S AS + S + S +S SS ST S +SS L +S
Sbjct: 176 A--TSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASS 230
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -3
Query: 310 EPLQTEVNLVNQPSDVLKLLFVQDLRNLQTKINEALVA 197
E + VN+ D LK L +DLR +QTK E+L A
Sbjct: 190 EASRLTVNIYRWTGDPLKDLLFKDLRPVQTKELESLFA 227
>SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, Anp
family |Schizosaccharomyces pombe|chr 2|||Manual
Length = 430
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +1
Query: 460 KTRHWELSFSLQLWHFYICQHYPRIPTAPHTTIAN*VVH 576
+ R+W LS ++Q +H ++ + TAP+T + + + H
Sbjct: 200 RARNWLLSAAIQPYHSWVYWRDVDVETAPNTILEDLMRH 238
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.6 bits (56), Expect = 4.0
Identities = 31/105 (29%), Positives = 45/105 (42%)
Frame = +3
Query: 450 NGLEDTTLGAFFFSSTLAFLYLSTLSAYSNRTAYDNSQLSCSFSVPSAAGLTKSF*YVLY 629
NG+ TT+ + SST + S+ S+ S T S S S S S++ + S
Sbjct: 120 NGVLQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSS--SSSS 177
Query: 630 ASFQKSESIFLNPSRSSIX*CLIXXSSNHSTTLLYSFSSSQLKNS 764
+S S S + S SS SS+ S + S SSS +S
Sbjct: 178 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSS 222
Score = 25.4 bits (53), Expect = 9.2
Identities = 28/110 (25%), Positives = 49/110 (44%)
Frame = +3
Query: 420 NA*LEKSRLSNGLEDTTLGAFFFSSTLAFLYLSTLSAYSNRTAYDNSQLSCSFSVPSAAG 599
N L+ + S+ + TT + S + + +T + S+ ++ +S S S S S++
Sbjct: 120 NGVLQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSS 179
Query: 600 LTKSF*YVLYASFQKSESIFLNPSRSSIX*CLIXXSSNHSTTLLYSFSSS 749
+ S +S S S + S SS SS+HS++ S SSS
Sbjct: 180 SSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSS 229
>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 735
Score = 26.2 bits (55), Expect = 5.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 457 NPLDNLDFSSQAFKAGVNRVCTVASIGPHPDPKIRLA 347
N +LDF +AF A + TV + P DPK L+
Sbjct: 355 NEEGSLDFLHRAFSATIKEYHTVWTATPRLDPKTGLS 391
>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 435
Score = 26.2 bits (55), Expect = 5.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 682 IEDREGLRNIDSDFWKEAYNTYQKDLVSPAAEGTLNE 572
+E + L+N+D + +K+ YN VSP G LN+
Sbjct: 20 VEMKPFLKNLDKNLFKKTYNLVAAK-VSPKKVGLLNK 55
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 26.2 bits (55), Expect = 5.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 367 DPKIRLAALAKVLKTSPHPEPLQTEVNLVNQPSD 266
+PK+ LA +A + T P EPL E +P D
Sbjct: 348 NPKLNLAFVAHLFNTHPGLEPLNEEEKPEIEPFD 381
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 16 YHFNMVLHHIQYQRNSFSS 72
Y N V+HH+ Y NSF S
Sbjct: 737 YSINKVVHHLNYFMNSFLS 755
>SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual
Length = 312
Score = 25.8 bits (54), Expect = 7.0
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -3
Query: 448 DNLDFSSQAFKAGVNRVCTVASIGPHP 368
DN++ S +A N C +++G HP
Sbjct: 60 DNVENSEEALNLATNYECFTSTVGVHP 86
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 393 VQTLLTPALNA*LEKSRLSNGLEDTTLGAF 482
+Q T NA EKSR+ N LED T F
Sbjct: 90 LQLTETKCRNAESEKSRVENELEDLTSSLF 119
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/45 (26%), Positives = 28/45 (62%)
Frame = -3
Query: 331 LKTSPHPEPLQTEVNLVNQPSDVLKLLFVQDLRNLQTKINEALVA 197
L+T + + L+ ++ N+P+D+ KLL + + +L K+N+ ++
Sbjct: 311 LRTLENLKHLRITLSYFNKPTDIAKLLVIARIPSL-VKLNDVNIS 354
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,708,264
Number of Sequences: 5004
Number of extensions: 47629
Number of successful extensions: 152
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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