Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_G01
         (780 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0056 + 7828453-7828717,7829425-7829427,7829658-7829912,782...    30   2.4  
05_06_0190 - 26260743-26261198,26261261-26261355,26261425-26262181     29   4.1  
04_04_0706 + 27419215-27419371,27419521-27419734,27419818-274199...    28   9.6  

>11_02_0056 +
           7828453-7828717,7829425-7829427,7829658-7829912,
           7829997-7830124,7831063-7831207,7832178-7832275,
           7833253-7833395,7835119-7835239,7835492-7835584,
           7835712-7835828
          Length = 455

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
 Frame = +3

Query: 306 GSGCGEVFSTLAKAASLILGSG*GPMLATVQTLLTPALNA*LEKSRLSNGLEDTTLGAFF 485
           G G GE FST   A  +   S     L++  + + P  +A L  S L  G ED  +    
Sbjct: 38  GDGDGEAFSTTTTAVRISASSPLRRALSSAASGILPGGSAHLLPSPLPLGEEDLNV---- 93

Query: 486 FSSTLAFLYLSTLSAYSNRTAYDNSQLS-CSFSVP 587
           +S    F +L+  ++ SN +A   +Q S  S SVP
Sbjct: 94  YSLRAGFSFLNFFTSASNWSAGFPTQNSFASASVP 128


>05_06_0190 - 26260743-26261198,26261261-26261355,26261425-26262181
          Length = 435

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -3

Query: 751 CEDE--KEYRSVVLWLEDXXIRHYXIEDREGLRNIDSDFWKEAY 626
           C DE  K + S++L+     ++H  +       ++D D WKE Y
Sbjct: 221 CRDERVKSHFSLILFYNGDELKHETVATFRDRCDVDEDTWKELY 264


>04_04_0706 +
           27419215-27419371,27419521-27419734,27419818-27419913,
           27420006-27420123,27420211-27420384,27420633-27420803,
           27420932-27420987,27421125-27421214,27421296-27421444,
           27421640-27421722,27421830-27421958,27422063-27422137,
           27422248-27422416,27422965-27423104,27423191-27423298,
           27423603-27423783,27424445-27424542,27424639-27424728,
           27424881-27425034,27425376-27425431,27425483-27425533,
           27425651-27425732,27425821-27425995,27426748-27426823,
           27426951-27427121,27427198-27427269,27427350-27427454,
           27427948-27428037,27428703-27428908,27428989-27429190,
           27429294-27429473,27429858-27429925,27430005-27430341,
           27430428-27430637,27430765-27431448,27431537-27431940,
           27432495-27432542,27432777-27433023,27433381-27433602,
           27433796-27434026
          Length = 2122

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -3

Query: 373 HPDPKIRLAALAKVLKTSPHPEPLQTEVNLVNQPSDVLKLLFVQDLRNLQTKIN-EALVA 197
           HP  ++R +AL+K+  ++          NL+N    ++  ++  DL  ++  ++ E L A
Sbjct: 477 HPKAEVRKSALSKIATSNIFKNHNLNPQNLINMQDAIIHNMYDDDLSVVEAALSIEGLAA 536

Query: 196 V 194
           V
Sbjct: 537 V 537


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,765,515
Number of Sequences: 37544
Number of extensions: 293848
Number of successful extensions: 740
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)