Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_G01
         (780 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16320| Best HMM Match : No HMM Matches (HMM E-Value=.)              65   7e-11
SB_49016| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   1e-05
SB_45041| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_45335| Best HMM Match : Runt (HMM E-Value=0)                        28   9.8  

>SB_16320| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 64.9 bits (151), Expect = 7e-11
 Identities = 28/48 (58%), Positives = 40/48 (83%)
 Frame = -3

Query: 283 VNQPSDVLKLLFVQDLRNLQTKINEALVAVQTVTADPRTDTKLGRVGR 140
           VN+ + +L+LL + +LR+LQTKINEA+V VQ +TA+P+TD  LG+VGR
Sbjct: 91  VNEAAKILRLLHINELRDLQTKINEAIVKVQALTANPKTDQSLGKVGR 138



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 23/44 (52%), Positives = 32/44 (72%)
 Frame = -3

Query: 769 NPEFFNCEDEKEYRSVVLWLEDXXIRHYXIEDREGLRNIDSDFW 638
           +P+ FN ++E E R++V+WLED  IR Y IEDRE LR+I +  W
Sbjct: 13  HPDNFNIQNEDECRNLVVWLEDQKIRLYRIEDRESLRDIGNATW 56


>SB_49016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
 Frame = -3

Query: 619 YQKDLVSPAAEGTLNEQLNWLLSYAVRLEYADNVDXXXXXXXXXXXXXXXVVS-SNPLDN 443
           Y  DL  P      +  L+WLL++A+RLEYADN +                   +  L N
Sbjct: 1   YLDDLQCPLKSREKSTVLDWLLAHAIRLEYADNAEKYNSQSQRTASDTSKTTELTEALLN 60

Query: 442 LDFSSQAFKAGVNRVCTVASIGPHPDPKIRL 350
           L       KAGV  V  + ++  H DP + L
Sbjct: 61  LTADDADLKAGVLSVARLLNLPEHHDPYVLL 91


>SB_45041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1278

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 593  RWTHQIFLIRIVCLLPEIRINISQPFSVLNXVM 691
            RWT++ F  R + LLP  +IN  +P   +  ++
Sbjct: 981  RWTYREFFARYIMLLPSKKINRKKPRETIKLIL 1013


>SB_45335| Best HMM Match : Runt (HMM E-Value=0)
          Length = 496

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 388 ASIGPHPDPKIRLAALAKVLKTSPHPEPLQTEVNLVNQPSDV 263
           +S+ PHP P + ++  A  L+ +    P    VNL N  S++
Sbjct: 238 SSLSPHPQPDVSVSFAALPLQPTALQPPKPQTVNLQNTTSNM 279


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,883,940
Number of Sequences: 59808
Number of extensions: 350474
Number of successful extensions: 796
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)