Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_G01
         (780 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47075-2|CAA87380.1|  253|Caenorhabditis elegans Hypothetical pr...    46   3e-05
Z68296-2|CAA92592.1|  297|Caenorhabditis elegans Hypothetical pr...    29   4.9  
AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian el...    29   4.9  

>Z47075-2|CAA87380.1|  253|Caenorhabditis elegans Hypothetical
           protein E02H1.5 protein.
          Length = 253

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 27/135 (20%)
 Frame = -3

Query: 463 SSNPLDNLDFSSQAFKAGVNRVCTVASIGP-HPDPKIRLAALA----------------- 338
           S NPL+ LD+SS  F      +C++  I   HPDPK+ + A                   
Sbjct: 119 SQNPLNRLDYSSPNFAENARALCSILGISAHHPDPKVLMKAACLYIAENLGDDVIAEETE 178

Query: 337 ------KVLKTSPHPEPLQTEVN-LVNQPSDVLKLLFVQDLRNLQTKINEALVAVQTVTA 179
                 K L  +  P  +Q   N  V+  + +L+L+ ++ LR +   INE LV +Q +T 
Sbjct: 179 EVLKNKKTLNINAFPIGMQAPKNGAVHFSARLLRLICLRQLRVVSRMINETLVEIQNLTM 238

Query: 178 D--PRTDTKLGRVGR 140
           D   R D K  + GR
Sbjct: 239 DMSKRADLKQVQYGR 253


>Z68296-2|CAA92592.1|  297|Caenorhabditis elegans Hypothetical
           protein C46C2.3 protein.
          Length = 297

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = -3

Query: 367 DPKIRLAALAKVLKTSPHPEPLQTEVNLVNQPS---DVLKL-LFVQDLRNLQTKINE 209
           D   RL    K L   PHP  L   V L N PS   + LK  LF+ ++R   T I E
Sbjct: 121 DVAARLEEYGKALAYFPHPMLLVDAVKLENDPSVKLETLKRDLFMPEMRGKFTLIKE 177


>AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian
           elks/cast/erc/rab6 interactingprotein homolog protein 1
           protein.
          Length = 836

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 373 HPDPKIRLAALAKVLKTSPHPEPL 302
           HPDP I + A+A V+  +P P P+
Sbjct: 786 HPDPVISMNAMASVIPGAPLPAPV 809


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,933,232
Number of Sequences: 27780
Number of extensions: 269484
Number of successful extensions: 634
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)