Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_G01
         (780 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80920.1 68414.m09494 DNAJ heat shock N-terminal domain-conta...    29   3.5  
At5g26850.1 68418.m03203 expressed protein                             29   4.6  
At4g05580.1 68417.m00849 hypothetical protein                          29   4.6  
At1g42630.1 68414.m04918 zinc knuckle (CCHC-type) family protein...    28   8.0  
At1g40080.1 68414.m04737 hypothetical protein member of hypothet...    28   8.0  

>At1g80920.1 68414.m09494 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q05646 Chaperone
           protein dnaJ Erysipelothrix rhusiopathiae, SP|P45555
           Chaperone protein dnaJ (HSP40) Staphylococcus aureus;
           contains Pfam profile PF00226 DnaJ domain
          Length = 163

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 297 VCRGSGCGEVFSTLAKAASLIL 362
           VCRGS CG  F T+ +A  ++L
Sbjct: 86  VCRGSNCGVQFQTINEAYDIVL 107


>At5g26850.1 68418.m03203 expressed protein
          Length = 919

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = -3

Query: 691 HYXIEDREGLRNIDSDFWKEAYNTYQKDLVSPAAEGTLNEQLNW 560
           H  +E R G   I S    ++    Q  L S  A G LNE  NW
Sbjct: 498 HPNVETRVGAHEIFSVILLQSSGQSQAGLASVRASGYLNESRNW 541


>At4g05580.1 68417.m00849 hypothetical protein 
          Length = 116

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 600 VQRQKGR*MNNSIGYCRMRCGWNTRIMLTN 511
           V++ KG    ++ GY +MRC WN  ++ TN
Sbjct: 84  VEKNKGLAYESTTGYYQMRCRWN--VLTTN 111


>At1g42630.1 68414.m04918 zinc knuckle (CCHC-type) family protein
           contains Pfam profile PF00098: Zinc knuckle
          Length = 154

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 600 VQRQKGR*MNNSIGYCRMRCGWN 532
           V++ KG    ++ GY +MRC WN
Sbjct: 84  VEKNKGLTYESTTGYYQMRCRWN 106


>At1g40080.1 68414.m04737 hypothetical protein member of
           hypothetical protein common family
          Length = 154

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 600 VQRQKGR*MNNSIGYCRMRCGWN 532
           V++ KG    ++ GY +MRC WN
Sbjct: 84  VEKNKGLAYESTTGYYQMRCRWN 106


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,851,674
Number of Sequences: 28952
Number of extensions: 244408
Number of successful extensions: 584
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)