BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fcaL-P01_pT_F24 (684 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0) 72 4e-13 SB_7528| Best HMM Match : Aldo_ket_red (HMM E-Value=0) 31 1.1 SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7 SB_47767| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6 SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6 SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6 SB_28143| Best HMM Match : Neur_chan_memb (HMM E-Value=2.2) 28 8.1 >SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0) Length = 112 Score = 72.1 bits (169), Expect = 4e-13 Identities = 40/95 (42%), Positives = 50/95 (52%) Frame = -2 Query: 371 PFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXKEGDDIF 192 PF N PLRRIPQ YVI TST I + + KLP+H F K +D+F Sbjct: 2 PFKINGVPLRRIPQSYVIATSTHIDVSDVKLPEH----AFADESYFKGEPKKKKRSEDMF 57 Query: 191 ATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKK 87 E+ PSEQR DQK VD+ ++ I A P+ K Sbjct: 58 EEAAEEKKPSEQRIADQKAVDDQILPKISAVPNMK 92 >SB_7528| Best HMM Match : Aldo_ket_red (HMM E-Value=0) Length = 407 Score = 30.7 bits (66), Expect = 1.1 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%) Frame = -2 Query: 176 KYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLQGGLRT--PLQPISPS 27 + VP E+ + + K ++E VIK I A+ + V R L+ G++ P+ P S S Sbjct: 303 RLVPKERLEREPKVMEEPVIKEIAAKHNCSVARVLLRWGIQRGYPVLPKSTS 354 >SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1081 Score = 29.5 bits (63), Expect = 2.7 Identities = 19/64 (29%), Positives = 31/64 (48%) Frame = -3 Query: 277 QNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPD 98 + T ++ T++ + S+ +R S R H KP R++T SKP+EPD Sbjct: 966 RQTPLVDTTKAVGPLSSTSETRRRQSDSDSVLSRRLDH---TKPPLRKTTSNDSKPTEPD 1022 Query: 97 PTRR 86 +RR Sbjct: 1023 SSRR 1026 >SB_47767| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 113 Score = 28.7 bits (61), Expect = 4.6 Identities = 11/16 (68%), Positives = 11/16 (68%) Frame = -2 Query: 350 PLRRIPQRYVICTSTR 303 PLRR P RY IC TR Sbjct: 29 PLRRTPDRYAICDDTR 44 >SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1396 Score = 28.7 bits (61), Expect = 4.6 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%) Frame = -1 Query: 588 NQNSTPQ---T*EVLLPHSGENPCLIWWPSIQQACTQDPTQP 472 NQ++ PQ T VL+PH G PC+ +P+ TQP Sbjct: 94 NQSTLPQGNATQWVLIPHKGSMPCIGTFPNAINTWIIPGTQP 135 >SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2235 Score = 28.7 bits (61), Expect = 4.6 Identities = 11/16 (68%), Positives = 11/16 (68%) Frame = -2 Query: 350 PLRRIPQRYVICTSTR 303 PLRR P RY IC TR Sbjct: 33 PLRRTPDRYAICDDTR 48 Score = 28.7 bits (61), Expect = 4.6 Identities = 11/16 (68%), Positives = 11/16 (68%) Frame = -2 Query: 350 PLRRIPQRYVICTSTR 303 PLRR P RY IC TR Sbjct: 106 PLRRTPDRYAICDDTR 121 >SB_28143| Best HMM Match : Neur_chan_memb (HMM E-Value=2.2) Length = 356 Score = 27.9 bits (59), Expect = 8.1 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = -3 Query: 586 PEQYPSNVGSPSTPLRRKSVPHLVAVHSASMYAGSD 479 P Y ++ GSP+ +RK+ PH HS+ A D Sbjct: 112 PMAYLTSTGSPNPQRKRKNDPHRTIDHSSVHRASRD 147 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 21,685,203 Number of Sequences: 59808 Number of extensions: 479592 Number of successful extensions: 1438 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 1314 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1432 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1769412099 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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