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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_F24
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)               72   4e-13
SB_7528| Best HMM Match : Aldo_ket_red (HMM E-Value=0)                 31   1.1  
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.7  
SB_47767| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.6  
SB_28143| Best HMM Match : Neur_chan_memb (HMM E-Value=2.2)            28   8.1  

>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
          Length = 112

 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 40/95 (42%), Positives = 50/95 (52%)
 Frame = -2

Query: 371 PFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXKEGDDIF 192
           PF  N  PLRRIPQ YVI TST I + + KLP+H     F             K  +D+F
Sbjct: 2   PFKINGVPLRRIPQSYVIATSTHIDVSDVKLPEH----AFADESYFKGEPKKKKRSEDMF 57

Query: 191 ATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKK 87
               E+  PSEQR  DQK VD+ ++  I A P+ K
Sbjct: 58  EEAAEEKKPSEQRIADQKAVDDQILPKISAVPNMK 92


>SB_7528| Best HMM Match : Aldo_ket_red (HMM E-Value=0)
          Length = 407

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = -2

Query: 176 KYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLQGGLRT--PLQPISPS 27
           + VP E+ + + K ++E VIK I A+ +  V R  L+ G++   P+ P S S
Sbjct: 303 RLVPKERLEREPKVMEEPVIKEIAAKHNCSVARVLLRWGIQRGYPVLPKSTS 354


>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = -3

Query: 277  QNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPD 98
            + T ++ T++ +   S+     +R   S     R   H    KP  R++T   SKP+EPD
Sbjct: 966  RQTPLVDTTKAVGPLSSTSETRRRQSDSDSVLSRRLDH---TKPPLRKTTSNDSKPTEPD 1022

Query: 97   PTRR 86
             +RR
Sbjct: 1023 SSRR 1026


>SB_47767| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -2

Query: 350 PLRRIPQRYVICTSTR 303
           PLRR P RY IC  TR
Sbjct: 29  PLRRTPDRYAICDDTR 44


>SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -1

Query: 588 NQNSTPQ---T*EVLLPHSGENPCLIWWPSIQQACTQDPTQP 472
           NQ++ PQ   T  VL+PH G  PC+  +P+         TQP
Sbjct: 94  NQSTLPQGNATQWVLIPHKGSMPCIGTFPNAINTWIIPGTQP 135


>SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2235

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -2

Query: 350 PLRRIPQRYVICTSTR 303
           PLRR P RY IC  TR
Sbjct: 33  PLRRTPDRYAICDDTR 48



 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -2

Query: 350 PLRRIPQRYVICTSTR 303
           PLRR P RY IC  TR
Sbjct: 106 PLRRTPDRYAICDDTR 121


>SB_28143| Best HMM Match : Neur_chan_memb (HMM E-Value=2.2)
          Length = 356

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 586 PEQYPSNVGSPSTPLRRKSVPHLVAVHSASMYAGSD 479
           P  Y ++ GSP+   +RK+ PH    HS+   A  D
Sbjct: 112 PMAYLTSTGSPNPQRKRKNDPHRTIDHSSVHRASRD 147


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,685,203
Number of Sequences: 59808
Number of extensions: 479592
Number of successful extensions: 1438
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1432
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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