Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_F21
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    26   5.5  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    25   7.3  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   9.6  
SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Schi...    25   9.6  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   9.6  
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    25   9.6  
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   9.6  
SPCC594.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   9.6  

>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = -1

Query: 383 TLDRKQFGRPLASNQLVQKKLADMLTEINIGYQAC--LRVGRLKDEDKAAPEMISLIKRN 210
           +L  K+ G        V K   D LT+I     +   L   R   +++  P  ISLI  N
Sbjct: 292 SLINKKVGSFDTVKNTVNKAFRDRLTQILTPSTSLDLLHSIRSVRKNENRPYTISLIGVN 351

Query: 209 SCGKALEIARVARDMLGGN 153
             GK+  +A++A  +L  N
Sbjct: 352 GVGKSTTLAKIAYWLLSNN 370


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 154 LPPSMSLATLAISNALPQLFLLIKDIISGAALSSS 258
           +PPSM+  T +  + LP+ F    +++  AAL S+
Sbjct: 87  IPPSMNYPTPSTPSVLPESFSNDTNLLDPAALPSA 121


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 491  VVGLKGPFGCLNNARYGIAWG 429
            VVG+   +G  + ARY I WG
Sbjct: 1356 VVGVSNKYGKRSKARYPIFWG 1376


>SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 404 LRIARQYTLDRKQFGRPLASNQL 336
           +R+ARQ   D   FG PLAS  L
Sbjct: 135 IRMARQMYCDVTNFGIPLASEML 157


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +1

Query: 139 SSEIPLPPSMSLATLAISNALPQLF---LLIKDII 234
           S ++ L   M++ T   +NA+PQ+F   L I D +
Sbjct: 182 SMQLTLTEGMAVTTAVYTNAIPQIFSSTLYINDFV 216


>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 558 GIGNRNDIARRSGYTGGEFIAECSG 484
           G G RN +ARR  + G     +C G
Sbjct: 103 GCGRRNQLARRLAFLGSFGDGDCDG 127


>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -1

Query: 143 DEYHIIRHVMNLEAVNTYEGTHDIHALXLGR 51
           D  H+IRH +  EA   YEG        LGR
Sbjct: 234 DHSHVIRHRLFREACCNYEGNFVKDLSQLGR 264


>SPCC594.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 108

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -1

Query: 575 GKFSLRASATGMILLDEVVIPEENLLPNVVGLKGPFGCLNNARYGIA 435
           GK  L  S T   L++  V+  +N  P  +   G FGC +    GIA
Sbjct: 30  GKRILCISITDAALVNLEVLEPKNFEPGTLDGAGLFGCWSANGLGIA 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,417,877
Number of Sequences: 5004
Number of extensions: 45698
Number of successful extensions: 113
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)