Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_F19
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...   103   3e-23
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    97   3e-21
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    28   1.7  
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    27   3.0  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   3.9  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score =  103 bits (247), Expect = 3e-23
 Identities = 50/82 (60%), Positives = 58/82 (70%)
 Frame = -1

Query: 417 QRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSE 238
           Q+ V KG H K  RK+R S  FRRPKT E  R PKY RKS+P  +R+D Y II  P+ SE
Sbjct: 10  QKTVQKGIHNKVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKIIVNPINSE 69

Query: 237 AAMKKIEDNNTLVFIVHTSANK 172
           +AMKKIED+NTLVF VH  ANK
Sbjct: 70  SAMKKIEDDNTLVFHVHLKANK 91



 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 21/45 (46%), Positives = 26/45 (57%)
 Frame = -2

Query: 161 KAAVKKLYDINVAKVNTLIRPDGKKKXXXXXXXXXXXXXXANKIG 27
           K AVKKLY ++  K+NTLIRP+G KK              AN+IG
Sbjct: 95  KNAVKKLYSVDAVKINTLIRPNGTKKAFVKLSADADALDVANRIG 139


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 96.7 bits (230), Expect = 3e-21
 Identities = 47/82 (57%), Positives = 56/82 (68%)
 Frame = -1

Query: 417 QRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSE 238
           Q+ V KG H K  +K+R S  FRRPKT +  R PKY RKS+    R+D Y II  P+ SE
Sbjct: 10  QKTVQKGIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKIIVNPINSE 69

Query: 237 AAMKKIEDNNTLVFIVHTSANK 172
           +AMKKIED+NTLVF VH  ANK
Sbjct: 70  SAMKKIEDDNTLVFHVHLKANK 91



 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 20/45 (44%), Positives = 25/45 (55%)
 Frame = -2

Query: 161 KAAVKKLYDINVAKVNTLIRPDGKKKXXXXXXXXXXXXXXANKIG 27
           K AV+KLY +   K+NTLIRP+G KK              AN+IG
Sbjct: 95  KEAVRKLYSVEPVKINTLIRPNGTKKAFVKLSADADALDVANRIG 139


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +1

Query: 166 MVLVCTCVDNKDQGVVIFNLLHCCFRREREFNDVVGIHAISLRQ 297
           MV++  C+D KD  + +     C  + + EF DV+  + +   Q
Sbjct: 787 MVILLDCLDPKDPTIKLQKQKACLNKYKEEFADVIFFYLVDTEQ 830


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +1

Query: 340 LGSAEMHRVANFPYSLPMFTFY--NLPLSLKCFSNRFHYFFCPLIPVFLGFGAIF 498
           LG      +A+   + P+ TF   N  +SL   +NR   FFC +I  F+G  A F
Sbjct: 385 LGDGLASLIASLMTTTPLTTFAQNNGVISLTKCANRRAGFFCAVILFFMGLFAKF 439


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 18  YIDANFVGNVQCVIISRXSYVRFLLTIRPD 107
           +I +NF  NV C I    S   F   IRPD
Sbjct: 868 FISSNFFENVPCYISLEQSLQNFQNDIRPD 897


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,259,395
Number of Sequences: 5004
Number of extensions: 40787
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)