Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_F19
         (771 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57676| Best HMM Match : No HMM Matches (HMM E-Value=.)             102   4e-22
SB_41793| Best HMM Match : Ribosomal_L23 (HMM E-Value=1.9e-17)         52   4e-07
SB_52395| Best HMM Match : TP2 (HMM E-Value=7.8)                       29   3.1  
SB_46803| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_10378| Best HMM Match : TSGP1 (HMM E-Value=2)                       29   4.2  
SB_47629| Best HMM Match : Vicilin_N (HMM E-Value=1.1)                 29   5.5  
SB_58199| Best HMM Match : DUF1388 (HMM E-Value=0.0002)                28   9.6  
SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)                 28   9.6  
SB_32271| Best HMM Match : Antimicrobial18 (HMM E-Value=1.6)           28   9.6  
SB_10533| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_57676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score =  102 bits (244), Expect = 4e-22
 Identities = 48/82 (58%), Positives = 59/82 (71%)
 Frame = -1

Query: 417 QRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSE 238
           ++ V KG    + +K+R SV F RPKT    R+PKYPR S P+ N++D Y IIK PLT+E
Sbjct: 143 KKAVQKGVRAAKTKKVRTSVKFHRPKTLSLRRNPKYPRTSAPRINKLDHYAIIKHPLTTE 202

Query: 237 AAMKKIEDNNTLVFIVHTSANK 172
           +AMKKIEDNNTLVFIV   ANK
Sbjct: 203 SAMKKIEDNNTLVFIVDVRANK 224



 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 25/45 (55%), Positives = 30/45 (66%)
 Frame = -2

Query: 161 KAAVKKLYDINVAKVNTLIRPDGKKKXXXXXXXXXXXXXXANKIG 27
           KAAVKKLYDI V+KVNTL+RPDG+KK              +NK+G
Sbjct: 228 KAAVKKLYDIVVSKVNTLVRPDGQKKAYVRLAPDYDALDVSNKVG 272


>SB_41793| Best HMM Match : Ribosomal_L23 (HMM E-Value=1.9e-17)
          Length = 71

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 25/45 (55%), Positives = 30/45 (66%)
 Frame = -2

Query: 161 KAAVKKLYDINVAKVNTLIRPDGKKKXXXXXXXXXXXXXXANKIG 27
           KAAVKKLYDI V+KVNTL+RPDG+KK              +NK+G
Sbjct: 24  KAAVKKLYDIVVSKVNTLVRPDGQKKAYVRLAPDYDALDVSNKVG 68



 Score = 37.1 bits (82), Expect = 0.016
 Identities = 17/20 (85%), Positives = 17/20 (85%)
 Frame = -1

Query: 231 MKKIEDNNTLVFIVHTSANK 172
           MKKIEDNNTLVFIV   ANK
Sbjct: 1   MKKIEDNNTLVFIVDVRANK 20


>SB_52395| Best HMM Match : TP2 (HMM E-Value=7.8)
          Length = 149

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = -1

Query: 357 HFRRPKTFEPPRHPKYPRKSLPKRN-RMDAYNIIKF---PLTSEAAMKKI 220
           H   P+ F PP+H   PRK  P +N  +   N+      PL   +A KKI
Sbjct: 66  HRALPRKFWPPKHRALPRKFWPSKNIALTTENLAPKKIPPLPGNSAPKKI 115


>SB_46803| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = -2

Query: 272 PTTSLNSLSRLKQQ*RRLKITTPWSLLSTQVQT-STIXKAAVKKLYDINVAKVNT 111
           P+T +++  R     +  ++ TP ++ STQV+T ST+  A V+    +  A+V T
Sbjct: 81  PSTVISTQVRTPSTVKSAQVRTPSTVKSTQVRTPSTVKSAQVRTPSTVKSAQVRT 135



 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = -2

Query: 272 PTTSLNSLSRLKQQ*RRLKITTPWSLLSTQVQT-STIXKAAVKKLYDINVAKVNT 111
           P+T  ++  R     +  ++ TP +++STQV+T ST+  A V+    +  A+V T
Sbjct: 4   PSTVKSAQVRTPSTVKSAQVRTPSTVISTQVRTPSTVKSAQVRTPGTVKSAQVRT 58


>SB_10378| Best HMM Match : TSGP1 (HMM E-Value=2)
          Length = 114

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 387 KRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAY 268
           K+ RK +     R+PK  + PR PK P+K   ++N+   +
Sbjct: 68  KKPRKPKKPKKPRKPKKPKKPRKPKKPKKGKWRKNKQGGH 107


>SB_47629| Best HMM Match : Vicilin_N (HMM E-Value=1.1)
          Length = 599

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = -1

Query: 411 KVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRK----SLPKRNRMDA 271
           K+VKGE  K+ ++     H +  K       PK PRK    S P+R   DA
Sbjct: 537 KLVKGEKSKKQKRGEREDHGKTSKDNRKSTSPKEPRKTQNESKPQRESPDA 587


>SB_58199| Best HMM Match : DUF1388 (HMM E-Value=0.0002)
          Length = 638

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -2

Query: 272 PTTSLNSLSRLKQQ*RRLKITTPWSLLSTQVQT-STIXKAAVKKLYDINVAKVNT 111
           P+T  ++  R     +  ++ TP ++ STQV+T ST+  A VK    +  A+V T
Sbjct: 59  PSTVKSTQVRTPGTVKSAQVRTPGTVKSTQVRTPSTVKSAQVKTPGTVKSAQVRT 113


>SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)
          Length = 756

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 275 SMRFLLGRDFLGYLGCLGGSNVLGLRKC 358
           SMR++ G  F+G L C  G + L LR C
Sbjct: 636 SMRYINGLHFIGLLLCAVGLSCLVLRTC 663


>SB_32271| Best HMM Match : Antimicrobial18 (HMM E-Value=1.6)
          Length = 154

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 322 PRRFKRLGSAEMHRVANFPYSLPMFTFYNLPLSL 423
           PRR +R+   ++ +  N P +  +F +YNL + L
Sbjct: 49  PRRCRRVSDEQVEKSPNEPKAQSLFLWYNLAIRL 82


>SB_10533| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 190 DNKDQGVVIFNLLHCCFRREREFNDVVGIHAISLRQRLP 306
           DN     VIFNL+HC + R  +    VG   +   QR P
Sbjct: 30  DNVGLSFVIFNLVHCLWHRFLKAIPCVGGGWLDFYQRTP 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,913,044
Number of Sequences: 59808
Number of extensions: 301887
Number of successful extensions: 786
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)