Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_F19
         (771 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal prote...   101   4e-22
Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical pr...   101   6e-22
Z50873-2|CAA90759.2|  620|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z50873-1|CAA90760.2|  961|Caenorhabditis elegans Hypothetical pr...    31   1.2  
X92565-1|CAA63315.1|  620|Caenorhabditis elegans LIN-2B protein.       31   1.2  
X92564-1|CAA63314.1|  961|Caenorhabditis elegans LIN-2A protein.       31   1.2  
Z70782-8|CAA94845.2|  536|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AC024797-3|AAF60706.1|  112|Caenorhabditis elegans Hypothetical ...    29   3.7  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    29   4.8  
AF003151-9|AAK18911.1|  168|Caenorhabditis elegans Hypothetical ...    28   8.5  

>U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 25.1 protein.
          Length = 147

 Score =  101 bits (243), Expect = 4e-22
 Identities = 46/83 (55%), Positives = 63/83 (75%)
 Frame = -1

Query: 417 QRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSE 238
           ++KVVKG+     R++R SVHFRRP T +  R  ++PRKS PK ++MD + II+ PLT+E
Sbjct: 16  KKKVVKGKRTTHRRQVRTSVHFRRPVTLKTARQARFPRKSAPKTSKMDHFRIIQHPLTTE 75

Query: 237 AAMKKIEDNNTLVFIVHTSANKH 169
           +AMKKIE++NTLVFIV   ANK+
Sbjct: 76  SAMKKIEEHNTLVFIVSNDANKY 98



 Score = 35.1 bits (77), Expect = 0.056
 Identities = 20/46 (43%), Positives = 24/46 (52%)
 Frame = -2

Query: 161 KAAVKKLYDINVAKVNTLIRPDGKKKXXXXXXXXXXXXXXANKIGI 24
           K AV KLY++   KVNTLI P  +KK              ANKIG+
Sbjct: 101 KDAVHKLYNVQALKVNTLITPLQQKKAYVRLTADYDALDVANKIGV 146


>Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical
           protein F52B5.6 protein.
          Length = 146

 Score =  101 bits (242), Expect = 6e-22
 Identities = 46/84 (54%), Positives = 61/84 (72%)
 Frame = -1

Query: 417 QRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSE 238
           ++ VVKG      + +R SVHFRRPKT    R P+Y RKS P R+++D++ +IK P T+E
Sbjct: 15  KKAVVKGSKTNVRKNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDSFAVIKAPHTTE 74

Query: 237 AAMKKIEDNNTLVFIVHTSANKHH 166
           ++MKKIED+NTLVFIV   ANKHH
Sbjct: 75  SSMKKIEDHNTLVFIVDEKANKHH 98



 Score = 32.3 bits (70), Expect = 0.39
 Identities = 19/45 (42%), Positives = 22/45 (48%)
 Frame = -2

Query: 161 KAAVKKLYDINVAKVNTLIRPDGKKKXXXXXXXXXXXXXXANKIG 27
           K AV  LY++   KVNTLI P  +KK              ANKIG
Sbjct: 100 KRAVHALYNVKAVKVNTLITPLQQKKAYVRLASDYDALDVANKIG 144


>Z50873-2|CAA90759.2|  620|Caenorhabditis elegans Hypothetical
           protein F17E5.1b protein.
          Length = 620

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = -1

Query: 408 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 232
           V+ G HG   R I+N++  R P  F  P  H   P    P+++ +D  +   + +T+E  
Sbjct: 437 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 490

Query: 231 MKKIEDNNTLVFIVH 187
           M  I++N  L +  H
Sbjct: 491 MADIQNNEYLEYGTH 505


>Z50873-1|CAA90760.2|  961|Caenorhabditis elegans Hypothetical
           protein F17E5.1a protein.
          Length = 961

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = -1

Query: 408 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 232
           V+ G HG   R I+N++  R P  F  P  H   P    P+++ +D  +   + +T+E  
Sbjct: 778 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 831

Query: 231 MKKIEDNNTLVFIVH 187
           M  I++N  L +  H
Sbjct: 832 MADIQNNEYLEYGTH 846


>X92565-1|CAA63315.1|  620|Caenorhabditis elegans LIN-2B protein.
          Length = 620

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = -1

Query: 408 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 232
           V+ G HG   R I+N++  R P  F  P  H   P    P+++ +D  +   + +T+E  
Sbjct: 437 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 490

Query: 231 MKKIEDNNTLVFIVH 187
           M  I++N  L +  H
Sbjct: 491 MADIQNNEYLEYGTH 505


>X92564-1|CAA63314.1|  961|Caenorhabditis elegans LIN-2A protein.
          Length = 961

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = -1

Query: 408 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 232
           V+ G HG   R I+N++  R P  F  P  H   P    P+++ +D  +   + +T+E  
Sbjct: 778 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 831

Query: 231 MKKIEDNNTLVFIVH 187
           M  I++N  L +  H
Sbjct: 832 MADIQNNEYLEYGTH 846


>Z70782-8|CAA94845.2|  536|Caenorhabditis elegans Hypothetical
           protein R04B5.9 protein.
          Length = 536

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 355 MHRVANFPYSLPMFTFYNLPLSLKCFSNRFHYFFCPLIPVFLGF 486
           +H +      L +  +YNL + + CF   F++   P   +F GF
Sbjct: 477 VHELLTEGRDLSIIKYYNLDIIVPCFFVAFYFIIFPFFKLFGGF 520


>AC024797-3|AAF60706.1|  112|Caenorhabditis elegans Hypothetical
           protein Y48G8AR.3 protein.
          Length = 112

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 360 VHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAM 229
           + FRR  +    RH    R+++P ++      I KFP  SE A+
Sbjct: 1   MEFRRKCSRSAMRHKSQKRRAMPNQDVEKVNEIFKFPRISEQAL 44


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 379  YSLPMFTFYNLPLSLKCFSNRFHYFF 456
            +S  +  FYNL L  KCFS  FH+ F
Sbjct: 3293 FSKKVTFFYNL-LQSKCFSKHFHWLF 3317


>AF003151-9|AAK18911.1|  168|Caenorhabditis elegans Hypothetical
           protein D1007.4 protein.
          Length = 168

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -2

Query: 356 ISADPRRLNLLGTLSTQGSLCLREIAWMPTTSLNSLSRLK 237
           ++ DP   +LL     + S  ++ I W+P+ S+ S+ +LK
Sbjct: 34  MTRDPVSQSLLIAKIEENSTSIKSIEWIPSCSVKSIRKLK 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,603,299
Number of Sequences: 27780
Number of extensions: 235194
Number of successful extensions: 825
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)