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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_F19
         (771 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB) va...    95   5e-20
At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA) id...    92   4e-19

>At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB)
           various ribosomal L23a proteins
          Length = 154

 Score = 95.1 bits (226), Expect = 5e-20
 Identities = 44/72 (61%), Positives = 53/72 (73%)
 Frame = -1

Query: 387 KRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNN 208
           K  +KIR  V F RPKT   PR PKYP+ S   RN++D Y I+K+PLT+E+AMKKIEDNN
Sbjct: 33  KPAKKIRTKVTFHRPKTLTVPRKPKYPKISATPRNKLDHYQILKYPLTTESAMKKIEDNN 92

Query: 207 TLVFIVHTSANK 172
           TLVFIV   A+K
Sbjct: 93  TLVFIVDIRADK 104



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 26/46 (56%), Positives = 27/46 (58%)
 Frame = -2

Query: 161 KAAVKKLYDINVAKVNTLIRPDGKKKXXXXXXXXXXXXXXANKIGI 24
           K AVKK+YDI   KVNTLIRPDG KK              ANKIGI
Sbjct: 108 KDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 153


>At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA)
           identical to GB:AF034694
          Length = 154

 Score = 91.9 bits (218), Expect = 4e-19
 Identities = 43/72 (59%), Positives = 53/72 (73%)
 Frame = -1

Query: 387 KRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNN 208
           K+ +KIR  V F RPKT   PR  KYP+ S   RN++D Y I+K+PLT+E+AMKKIEDNN
Sbjct: 33  KKDKKIRTKVTFHRPKTLTKPRTGKYPKISATPRNKLDHYQILKYPLTTESAMKKIEDNN 92

Query: 207 TLVFIVHTSANK 172
           TLVFIV   A+K
Sbjct: 93  TLVFIVDIRADK 104



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 26/46 (56%), Positives = 27/46 (58%)
 Frame = -2

Query: 161 KAAVKKLYDINVAKVNTLIRPDGKKKXXXXXXXXXXXXXXANKIGI 24
           K AVKK+YDI   KVNTLIRPDG KK              ANKIGI
Sbjct: 108 KDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 153


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,958,285
Number of Sequences: 28952
Number of extensions: 219593
Number of successful extensions: 621
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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