BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fcaL-P01_pT_F19 (771 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB) va... 95 5e-20 At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA) id... 92 4e-19 >At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB) various ribosomal L23a proteins Length = 154 Score = 95.1 bits (226), Expect = 5e-20 Identities = 44/72 (61%), Positives = 53/72 (73%) Frame = -1 Query: 387 KRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNN 208 K +KIR V F RPKT PR PKYP+ S RN++D Y I+K+PLT+E+AMKKIEDNN Sbjct: 33 KPAKKIRTKVTFHRPKTLTVPRKPKYPKISATPRNKLDHYQILKYPLTTESAMKKIEDNN 92 Query: 207 TLVFIVHTSANK 172 TLVFIV A+K Sbjct: 93 TLVFIVDIRADK 104 Score = 48.4 bits (110), Expect = 5e-06 Identities = 26/46 (56%), Positives = 27/46 (58%) Frame = -2 Query: 161 KAAVKKLYDINVAKVNTLIRPDGKKKXXXXXXXXXXXXXXANKIGI 24 K AVKK+YDI KVNTLIRPDG KK ANKIGI Sbjct: 108 KDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 153 >At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA) identical to GB:AF034694 Length = 154 Score = 91.9 bits (218), Expect = 4e-19 Identities = 43/72 (59%), Positives = 53/72 (73%) Frame = -1 Query: 387 KRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNN 208 K+ +KIR V F RPKT PR KYP+ S RN++D Y I+K+PLT+E+AMKKIEDNN Sbjct: 33 KKDKKIRTKVTFHRPKTLTKPRTGKYPKISATPRNKLDHYQILKYPLTTESAMKKIEDNN 92 Query: 207 TLVFIVHTSANK 172 TLVFIV A+K Sbjct: 93 TLVFIVDIRADK 104 Score = 48.4 bits (110), Expect = 5e-06 Identities = 26/46 (56%), Positives = 27/46 (58%) Frame = -2 Query: 161 KAAVKKLYDINVAKVNTLIRPDGKKKXXXXXXXXXXXXXXANKIGI 24 K AVKK+YDI KVNTLIRPDG KK ANKIGI Sbjct: 108 KDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 153 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,958,285 Number of Sequences: 28952 Number of extensions: 219593 Number of successful extensions: 621 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 603 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 620 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1716774400 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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