Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_F18
         (609 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    23   2.7  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.6  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   8.1  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    21   8.1  

>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -2

Query: 431 DV*IYLYILVYHVKCSVQIKFIYLMSSQIR*IFKKYYVLDIC 306
           D+ + LYI++ + +       I L+ + +  IF+ YY+  +C
Sbjct: 231 DLYVTLYIILTNNQAKYCTTLIGLIKNCVIVIFELYYLSHVC 272


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 125 EN*VVV*NNCTSMELKCFNMKWNRN 51
           +N +++ N   S+E   +N+KWN +
Sbjct: 46  KNQLLITNIWLSLEWNDYNLKWNES 70


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 125 EN*VVV*NNCTSMELKCFNMKWNRN 51
           +N +++ N   S+E   +N+KWN +
Sbjct: 46  KNQLLITNIWLSLEWNDYNLKWNES 70


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 575 VYVLLYF*FADIFSITNRAFTCK 507
           +YVLL   FA  F+     F CK
Sbjct: 378 IYVLLINIFASYFAYIFGKFACK 400


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 575 VYVLLYF*FADIFSITNRAFTCK 507
           +YVLL   FA  F+     F CK
Sbjct: 378 IYVLLINIFASYFAYIFGKFACK 400


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 575 VYVLLYF*FADIFSITNRAFTCK 507
           +YVLL   FA  F+     F CK
Sbjct: 378 IYVLLINIFASYFAYIFGKFACK 400


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 575 VYVLLYF*FADIFSITNRAFTCK 507
           +YVLL   FA  F+     F CK
Sbjct: 378 IYVLLINIFASYFAYIFGKFACK 400


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -3

Query: 499 ILSSADFILSNTENCD*CFVSVQ 431
           ILS+  F++     CD C+ +++
Sbjct: 563 ILSNVTFVIDVVYVCDVCYSTIE 585


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -3

Query: 499 ILSSADFILSNTENCD*CFVSVQ 431
           ILS+  F++     CD C+ +++
Sbjct: 288 ILSNVTFVIDVVYVCDVCYSTIE 310


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,673
Number of Sequences: 336
Number of extensions: 3146
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)