Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_F18
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    28   1.2  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    27   2.8  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   6.5  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    25   8.7  

>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -1

Query: 189 QFLFESAGQCSNNYETKICQLRKLGGGLE*LHKYGTEMFQYEMESQPKDD-CLQGTERH 16
           Q L E +  C+N+Y T + Q+R  G  ++  H    E  +  +E   K D  + G+  H
Sbjct: 381 QRLDEISASCNNDYTTLLYQIRTFGYAVDEKHFKTNERLECLLEKLRKIDLTISGSTDH 439


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 484 RHYLGLYVLQVNARLVILKISAN*KYNNTYTP 579
           +H   L++   N +  I K+S N KYN+ Y P
Sbjct: 648 QHNNALFLGTSNVQRAISKVSLNMKYNSNYFP 679


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 110  PPPNFLNWHILVS 148
            PP NFL W I++S
Sbjct: 1029 PPSNFLTWEIIIS 1041


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +2

Query: 197 IYKRDKVLGYVAILKVITNTVQGKYCN*QINHNCFKNKYLV 319
           IY+R+K  G   +L+++ + + G     +  H  F +K L+
Sbjct: 392 IYEREKFHGIAELLEILGSIINGFAVPLKEEHKIFLSKVLI 432


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,287,815
Number of Sequences: 5004
Number of extensions: 45216
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)