Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_F18
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0503 + 29864421-29864550,29865143-29865215,29865486-298655...    28   5.0  
04_03_0965 - 21296608-21297165,21297332-21297682,21297781-212979...    28   6.7  
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410...    27   8.8  
01_06_1124 - 34679205-34680926,34681438-34682811                       27   8.8  

>01_06_0503 +
           29864421-29864550,29865143-29865215,29865486-29865537,
           29866496-29866506,29866793-29866819,29866892-29866910
          Length = 103

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = +2

Query: 167 PADSNKNCRDIYKRDKVLGYVAILKVITNTVQGKYCN*QI----NHNCFK 304
           P D   N  ++   DK+L  V I+ ++ ++V   Y N  I    NH C +
Sbjct: 35  PDDEPHNANELLLPDKILLVVTIVHIVASSVAHSYINLVIEIHFNHQCVR 84


>04_03_0965 -
           21296608-21297165,21297332-21297682,21297781-21297965,
           21298076-21298172,21298859-21299071,21299206-21299334,
           21299442-21299567,21301280-21301999
          Length = 792

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 574 YMYYYIFNLRISLVSLIEHLLVKHIILSSADFILSNTENC 455
           Y+  Y++ +R   V L   LLV + +L++  F+   +ENC
Sbjct: 574 YLTLYVWAVR-GFVELCYELLVPYCLLTNQSFLSKASENC 612


>06_01_0579 +
           4099039-4099086,4099798-4099848,4100151-4100286,
           4100287-4100401,4100496-4100528,4101037-4101166,
           4101663-4101751,4102042-4102148,4102238-4102309,
           4102384-4102764,4104907-4105064,4105581-4105674,
           4106082-4106089,4106297-4106387,4107136-4107289,
           4108257-4108377,4108468-4108551,4108946-4109065,
           4109181-4109393,4109482-4109544,4109668-4109783,
           4110132-4110190,4111126-4111445
          Length = 920

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 422 IYLYILVYHVKCSVQIKFIYLMS 354
           +YLY ++Y + C V +K ++L S
Sbjct: 47  LYLYYIIYSLLCEVTLKCLFLTS 69


>01_06_1124 - 34679205-34680926,34681438-34682811
          Length = 1031

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = -3

Query: 310 FVFETIVIYLLVTVFTL-HCICDDL*NGDV--TKNFISFIYVSTIFIRVGRTMFKQLRD* 140
           F F+T V   LV V+ L  C+ D     +    KN +S+  V T F   G   + +L   
Sbjct: 120 FEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNVVITGFAGWGEVEYARLLFE 179

Query: 139 NMPVKKIRWWSRII 98
            MP + +  WS +I
Sbjct: 180 RMPCRNVVSWSGMI 193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,057,943
Number of Sequences: 37544
Number of extensions: 235158
Number of successful extensions: 374
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)