Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_F18
         (609 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)                   28   6.8  
SB_9716| Best HMM Match : HMG_box (HMM E-Value=0.0041)                 27   9.0  

>SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)
          Length = 2865

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 75  TFQFHTCAIILDHHLIFLTGIF*SRNCLNIVLPTRIK 185
           T QFH+CAI  +  L+ L G   SR   + VL  R++
Sbjct: 325 TAQFHSCAIPAEMRLVLLRGKQKSRTMESSVLSPRME 361


>SB_9716| Best HMM Match : HMG_box (HMM E-Value=0.0041)
          Length = 169

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 598 N*CLYISV-YMYYYIFNLRISLVSLIEHLLVKHII 497
           N C Y+SV Y YYY++    SLV  IEH  +  I+
Sbjct: 86  NICSYLSVVYYYYYLY----SLVCEIEHRAISVIL 116


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,147,567
Number of Sequences: 59808
Number of extensions: 313519
Number of successful extensions: 537
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)