Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_F14
         (562 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.2  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    24   1.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.8  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   6.4  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 306 EGCTVFTKQSVTKNGKGMFKWLSN 377
           EGC  F ++S+TKN     K+ +N
Sbjct: 205 EGCKGFFRRSITKNAVYQCKYGNN 228


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 306 EGCTVFTKQSVTKNGKGMFKWLSN 377
           EGC  F ++S+TKN     K+ +N
Sbjct: 2   EGCKGFFRRSITKNAVYQCKYGNN 25


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 136 SILTYLLVCYFFCTSMDIFICLVSFFFLIY 47
           S  +Y+ V     TSM  +IC +   +L+Y
Sbjct: 639 SYYSYIGVLTLVATSMPTYICYLGKAYLMY 668


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 213 LYDLLNASTKKSRVNYNPRNPS 278
           L +L N   K   VNYNP   S
Sbjct: 404 LRELRNLGRKTIMVNYNPETVS 425


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,109
Number of Sequences: 438
Number of extensions: 2677
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)