Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_F14
         (562 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62230.1 68416.m06991 F-box family protein contains Pfam:PF00...    28   4.9  
At4g07450.1 68417.m01143 hypothetical protein includes At2g05890...    27   6.5  
At2g05890.1 68415.m00638 hypothetical protein includes At2g05890...    27   8.6  

>At3g62230.1 68416.m06991 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 461

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 12/82 (14%)
 Frame = +3

Query: 300 FKEGCTVFTKQSVTKNGKGMF------KWLSNN-AYEIQCAIFNC*LKF--ITELIT*R- 449
           F+EG T   + +V+KN K +F      +W++NN A +++  +      F  IT L+T + 
Sbjct: 103 FEEGVTTLIEFAVSKNVKHLFLDLSEPRWVTNNDAAQLEPGLIKLPESFYKITSLVTLKL 162

Query: 450 --CNYKP*FIYKSFYFESCFYK 509
             C ++P  + K    ++ F++
Sbjct: 163 FGCRFEPSRLAKPGMVKTMFFR 184


>At4g07450.1 68417.m01143 hypothetical protein includes At2g05890,
           At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
           At1g39430, At2g10460, At4g03640, At5g35250
          Length = 439

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 186 YCCNVNNILLYDLLNASTKKSRVNYNPRNPSFFCEICN 299
           +CC  +N  + +    + K   V   P+ P F+CEICN
Sbjct: 228 FCCRAHNKKVVE--EEAIKLEDVKL-PQKPRFWCEICN 262


>At2g05890.1 68415.m00638 hypothetical protein includes At2g05890,
           At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
           At1g39430, At2g10460, At4g03640, At5g35250
          Length = 456

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 186 YCCNVNNILLYDLLNASTKKSRVNYNPRNPSFFCEICN 299
           +CC  +N  +  +   + K   V   P+ P F+CEICN
Sbjct: 279 FCCRAHNKKV--VKEEAIKLEDVK-QPQKPRFWCEICN 313


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,976,689
Number of Sequences: 28952
Number of extensions: 180322
Number of successful extensions: 403
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)