Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_F13
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr...   132   4e-32
SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr 1|...   108   8e-25
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.2  
SPCC1235.11 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.1  

>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 279

 Score =  132 bits (319), Expect = 4e-32
 Identities = 69/154 (44%), Positives = 95/154 (61%)
 Frame = -3

Query: 625 MYRQLGTDYDEKXLPSICNEVLKSVVAKFNASQLITQRQQVSLLIRRELVERAADFNIIL 446
           +YR LG DYDE+ LPSI NEVLKSVVA+FNASQLITQR++VS L+R  L++RAA FNI+L
Sbjct: 115 IYRTLGGDYDERVLPSIVNEVLKSVVAQFNASQLITQRERVSRLVRENLMKRAARFNILL 174

Query: 445 DDVSLTELSFGKEYTXXXXXXXXXXXXXXXXXXXXERAKQERQQKIVQXXXXXXXXXXXX 266
           DDVSLT + F  E+T                    +RA+ E+Q  IV+            
Sbjct: 175 DDVSLTHVQFSPEFTAAVEAKQIAQQDAQRATFYVDRARMEKQGFIVRAQGEGRAAQLIG 234

Query: 265 XXXXMNPGYLKLRKIRAAQSISRMIAQSQNRVFL 164
                 PG+++LRK+  A+ I+ ++++S N+V L
Sbjct: 235 EAIKNKPGFIELRKLETAREIANILSKSNNKVML 268


>SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score =  108 bits (259), Expect = 8e-25
 Identities = 61/168 (36%), Positives = 97/168 (57%), Gaps = 2/168 (1%)
 Frame = -3

Query: 625 MYRQLGTDYDEKXLPSICNEVLKSVVAKFNASQLITQRQQVSLLIRRELVERAADFNIIL 446
           +Y+ LG DYDE+ LPSI NE+LKSVVA+F+A++LITQR+ VS  IR+ELV+RA +F I L
Sbjct: 105 IYQNLGLDYDERVLPSIGNEILKSVVAQFDAAELITQREVVSAKIRQELVQRATEFGIRL 164

Query: 445 DDVSLTELSFGKEYTXXXXXXXXXXXXXXXXXXXXERAKQERQQKIVQXXXXXXXXXXXX 266
           +DVS+T ++FGKE+T                    E+++QERQ  +++            
Sbjct: 165 EDVSITHMTFGKEFTKAVERKQIAQQEAERARFLVEQSEQERQANVIRAEGEAEAADIVS 224

Query: 265 XXXXMNPGYL-KLRKIRAAQSISRMIAQSQNRV-FLPWKQSDDQSSRS 128
                  G L ++R++  ++ ++  +A    +V +LP+    +  S S
Sbjct: 225 KALDKAGGALIQIRRLETSKEVATALANKGAQVTYLPFGAGSNAQSSS 272


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 627 QCTDNLEQIMMKXFCHLYAMKS*NRLLLNSMPPS*SH 517
           Q  DN++ I ++ FC +   +  +  L+ SMP +  H
Sbjct: 307 QIPDNIKHIELQCFCKVIVAQKLSETLVESMPFTYKH 343


>SPCC1235.11 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 141

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 223 IRAAQSISRMIAQSQNRVFLPWKQSDD 143
           + A++ +S+  AQS  R F+ W +S D
Sbjct: 1   MNASEKLSQKAAQSVTRRFITWLKSPD 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,043,400
Number of Sequences: 5004
Number of extensions: 32243
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)