Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_F13
(633 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0626 - 35169352-35169546,35169736-35169948,35170102-351702... 128 3e-30
07_01_1055 - 9253936-9254130,9254271-9254483,9254588-9254758,925... 126 1e-29
02_04_0362 - 22366668-22367516 114 5e-26
04_04_0143 - 23091613-23092467 113 1e-25
03_06_0437 - 33912326-33912520,33912870-33912998,33913147-339133... 103 2e-22
03_06_0427 - 33857008-33857137,33857224-33857258,33857966-338580... 46 2e-05
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 30 1.8
02_05_0681 + 30842038-30842301,30843067-30843300,30843409-308435... 27 9.4
>03_06_0626 -
35169352-35169546,35169736-35169948,35170102-35170272,
35170826-35170942,35171078-35171233
Length = 283
Score = 128 bits (310), Expect = 3e-30
Identities = 69/158 (43%), Positives = 97/158 (61%)
Frame = -3
Query: 628 TMYRQLGTDYDEKXLPSICNEVLKSVVAKFNASQLITQRQQVSLLIRRELVERAADFNII 449
T+YR LG +++E+ LPSI +E LK+VVA++NASQLITQR+ VS IR+ L ERA++FNI
Sbjct: 109 TIYRSLGENFNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERASNFNIA 168
Query: 448 LDDVSLTELSFGKEYTXXXXXXXXXXXXXXXXXXXXERAKQERQQKIVQXXXXXXXXXXX 269
LDDVS+T LSFGKE+T E+A+Q+++ I++
Sbjct: 169 LDDVSITSLSFGKEFTHAIEAKQVAAQEAERAKFIVEKAEQDKRSAIIRAQGEAKSAQLI 228
Query: 268 XXXXXMNPGYLKLRKIRAAQSISRMIAQSQNRVFLPWK 155
NP +L LR+I AA+ IS +A S N+V+L K
Sbjct: 229 GEAINNNPAFLALRQIEAAREISHTMASSNNKVYLDSK 266
>07_01_1055 -
9253936-9254130,9254271-9254483,9254588-9254758,
9255743-9255859,9257021-9257186,9258885-9258934,
9259095-9259268
Length = 361
Score = 126 bits (305), Expect = 1e-29
Identities = 68/155 (43%), Positives = 95/155 (61%)
Frame = -3
Query: 628 TMYRQLGTDYDEKXLPSICNEVLKSVVAKFNASQLITQRQQVSLLIRRELVERAADFNII 449
T+YR LG +++E+ LPSI +E LK+VVA++NASQLITQR+ VS IR+ L ERA +FNI
Sbjct: 187 TIYRTLGENFNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERARNFNIA 246
Query: 448 LDDVSLTELSFGKEYTXXXXXXXXXXXXXXXXXXXXERAKQERQQKIVQXXXXXXXXXXX 269
LDDVS+T LSFGKE+T E+A+Q+++ I++
Sbjct: 247 LDDVSITSLSFGKEFTHAIEAKQVAAQEAERAKFIVEKAEQDKRSAIIRAQGEAKSAELI 306
Query: 268 XXXXXMNPGYLKLRKIRAAQSISRMIAQSQNRVFL 164
NP +L LR+I AA+ IS ++ S N+VFL
Sbjct: 307 GQAIANNPAFLALRQIEAAREISHTMSSSANKVFL 341
>02_04_0362 - 22366668-22367516
Length = 282
Score = 114 bits (275), Expect = 5e-26
Identities = 62/156 (39%), Positives = 91/156 (58%), Gaps = 1/156 (0%)
Frame = -3
Query: 625 MYRQLGTDYDEKXLPSICNEVLKSVVAKFNASQLITQRQQVSLLIRRELVERAADFNIIL 446
++ LG +YDEK LPSI NEVLK+VVA+FNA QL+T+R VS L+R L+ RAA+FNI+L
Sbjct: 112 IFTSLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRDSLIRRAAEFNIVL 171
Query: 445 DDVSLTELSFGKEYTXXXXXXXXXXXXXXXXXXXXERAKQERQQKIVQ-XXXXXXXXXXX 269
DDV++T L++G E++ RA+QER+ IV+
Sbjct: 172 DDVAITHLAYGPEFSQAVEKKQVAQQEAERSRFLVARAEQERRAAIVRAEGESEAARLIS 231
Query: 268 XXXXXMNPGYLKLRKIRAAQSISRMIAQSQNRVFLP 161
G ++LR+I AA+ I+ +A+S N ++P
Sbjct: 232 EATAAAGTGLIELRRIEAAKEIAGELARSPNVSYIP 267
>04_04_0143 - 23091613-23092467
Length = 284
Score = 113 bits (272), Expect = 1e-25
Identities = 62/157 (39%), Positives = 91/157 (57%), Gaps = 1/157 (0%)
Frame = -3
Query: 628 TMYRQLGTDYDEKXLPSICNEVLKSVVAKFNASQLITQRQQVSLLIRRELVERAADFNII 449
T++ LG +YD+K LPSI NEVLK+VVA+FNA QL+T+R VS L+R L+ RA +FNII
Sbjct: 110 TIFTSLGLEYDDKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRDALIRRAREFNII 169
Query: 448 LDDVSLTELSFGKEYTXXXXXXXXXXXXXXXXXXXXERAKQERQQKIVQ-XXXXXXXXXX 272
LDDV++T LS+G E++ +A+QER+ IV+
Sbjct: 170 LDDVAITHLSYGIEFSQAVEKKQVAQQEAERSKFLVAKAEQERRAAIVRAEGESESARLI 229
Query: 271 XXXXXXMNPGYLKLRKIRAAQSISRMIAQSQNRVFLP 161
G ++LR+I AA+ I+ +A+S N ++P
Sbjct: 230 SEATAAAGTGLIELRRIEAAREIAAELARSPNVAYVP 266
>03_06_0437 -
33912326-33912520,33912870-33912998,33913147-33913317,
33913877-33913993,33914150-33914800
Length = 420
Score = 103 bits (246), Expect = 2e-22
Identities = 49/76 (64%), Positives = 64/76 (84%)
Frame = -3
Query: 628 TMYRQLGTDYDEKXLPSICNEVLKSVVAKFNASQLITQRQQVSLLIRRELVERAADFNII 449
T+YR LG +++E+ LPSI +E LK+VVA++NASQLITQR+ VS IR+ L ERA++FNI
Sbjct: 274 TIYRSLGENFNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERASNFNIA 333
Query: 448 LDDVSLTELSFGKEYT 401
LDDVS+T LSFGKE+T
Sbjct: 334 LDDVSITSLSFGKEFT 349
Score = 35.9 bits (79), Expect = 0.027
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = -3
Query: 250 NPGYLKLRKIRAAQSISRMIAQSQNRVFLPWK 155
NP +L LR+I AA+ IS +A+S N+V+L K
Sbjct: 372 NPAFLALRQIEAAREISHTMARSNNKVYLDSK 403
>03_06_0427 -
33857008-33857137,33857224-33857258,33857966-33858046,
33858213-33858338,33858410-33858568,33858797-33858934,
33859084-33859155,33859359-33860273
Length = 551
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/40 (52%), Positives = 30/40 (75%)
Frame = -3
Query: 628 TMYRQLGTDYDEKXLPSICNEVLKSVVAKFNASQLITQRQ 509
T YR LG ++ E+ L S+ +E LK+VVA++NASQLI R+
Sbjct: 389 TKYRSLGDNFCERVLTSLMHETLKAVVAQYNASQLIIPRE 428
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Frame = -3
Query: 628 TMYRQLGTDYDEKXLPSICNEVLKSVVAKFNASQLITQRQQ---------VSLLIRRELV 476
T+ +G D+K + N+ K VV + +L+ + VS R+E+V
Sbjct: 51 TLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIV 110
Query: 475 ERAADFNIILDDVSLTELSFGKE 407
ERAA +I++ + +LS+ E
Sbjct: 111 ERAAQLDIVISTLKFIQLSYDYE 133
>02_05_0681 +
30842038-30842301,30843067-30843300,30843409-30843578,
30844130-30844474,30844475-30844661,30844747-30844798,
30844843-30845108,30845302-30845400,30845577-30846292,
30846616-30847098,30847288-30847546
Length = 1024
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -3
Query: 184 SQNRVFLPWKQSDDQSSRSY 125
+Q+RVF P+ Q+D +SR+Y
Sbjct: 645 AQDRVFTPFMQADSSTSRNY 664
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,030,217
Number of Sequences: 37544
Number of extensions: 196182
Number of successful extensions: 387
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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