Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_F13
         (633 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28940-7|AAA68353.2|  294|Caenorhabditis elegans Mitochondrial p...   164   4e-41
AC087079-9|AAK27865.1|  275|Caenorhabditis elegans Mitochondrial...    97   9e-21
Z74037-5|CAA98493.3|  509|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AB044562-1|BAA96734.1|  509|Caenorhabditis elegans MIG-17 protein.     27   8.4  

>U28940-7|AAA68353.2|  294|Caenorhabditis elegans Mitochondrial
           prohibitin complexprotein 2 protein.
          Length = 294

 Score =  164 bits (399), Expect = 4e-41
 Identities = 83/155 (53%), Positives = 107/155 (69%)
 Frame = -3

Query: 625 MYRQLGTDYDEKXLPSICNEVLKSVVAKFNASQLITQRQQVSLLIRRELVERAADFNIIL 446
           +YR LG +++E+ LPSICNEVLK VVAKFNASQLITQRQQVS+L+R+ L+ERA DFNIIL
Sbjct: 119 IYRTLGQNWEERVLPSICNEVLKGVVAKFNASQLITQRQQVSMLVRKTLIERALDFNIIL 178

Query: 445 DDVSLTELSFGKEYTXXXXXXXXXXXXXXXXXXXXERAKQERQQKIVQXXXXXXXXXXXX 266
           DDVSLTEL+F  +Y+                    ERAKQ++Q+KIVQ            
Sbjct: 179 DDVSLTELAFSPQYSAAVEAKQVAAQEAQRATFYVERAKQQKQEKIVQAEGEAESAKLLG 238

Query: 265 XXXXMNPGYLKLRKIRAAQSISRMIAQSQNRVFLP 161
                +PG+LKLRKIRAAQ I+R++++S N+ +LP
Sbjct: 239 EAMKNDPGFLKLRKIRAAQKIARIVSESGNKTYLP 273


>AC087079-9|AAK27865.1|  275|Caenorhabditis elegans Mitochondrial
           prohibitin complexprotein 1 protein.
          Length = 275

 Score = 97.1 bits (231), Expect = 9e-21
 Identities = 56/159 (35%), Positives = 86/159 (54%), Gaps = 1/159 (0%)
 Frame = -3

Query: 625 MYRQLGTDYDEKXLPSICNEVLKSVVAKFNASQLITQRQQVSLLIRRELVERAADFNIIL 446
           +Y  +G DY E+ LPSI NEVLK+VVA+F+A ++ITQR+ VS      L ERAA F ++L
Sbjct: 109 IYLNIGLDYAERVLPSITNEVLKAVVAQFDAHEMITQREVVSQRASVALRERAAQFGLLL 168

Query: 445 DDVSLTELSFGKEYTXXXXXXXXXXXXXXXXXXXXERAKQERQQKI-VQXXXXXXXXXXX 269
           DD+++T L+FG+E+T                    E+A+Q +   +              
Sbjct: 169 DDIAITHLNFGREFTEAVEMKQVAQQEAEKARYLVEKAEQMKIAAVTTAEGDAQAAKLLA 228

Query: 268 XXXXXMNPGYLKLRKIRAAQSISRMIAQSQNRVFLPWKQ 152
                   G ++LRKI AA+ I+  +A+++N  +LP  Q
Sbjct: 229 KAFASAGDGLVELRKIEAAEEIAERMAKNKNVTYLPGNQ 267


>Z74037-5|CAA98493.3|  509|Caenorhabditis elegans Hypothetical
           protein F57B7.4 protein.
          Length = 509

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = -1

Query: 201 RE*LLNLRTVSSXPGNSLMINLQDPTFDDLSEKLTKK 91
           R+  LN R +S+   NS++ NL++PT + + +  TKK
Sbjct: 339 RQSFLNSRRMSNCSINSIIENLKEPTANCVKKWKTKK 375


>AB044562-1|BAA96734.1|  509|Caenorhabditis elegans MIG-17 protein.
          Length = 509

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = -1

Query: 201 RE*LLNLRTVSSXPGNSLMINLQDPTFDDLSEKLTKK 91
           R+  LN R +S+   NS++ NL++PT + + +  TKK
Sbjct: 339 RQSFLNSRRMSNCSINSIIENLKEPTANCVKKWKTKK 375


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,406,703
Number of Sequences: 27780
Number of extensions: 184168
Number of successful extensions: 453
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)