Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_F12
(453 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B) 136 7e-33
At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S ... 135 2e-32
At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S ... 135 2e-32
At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A) 134 3e-32
At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) simi... 133 6e-32
At1g25360.1 68414.m03146 pentatricopeptide (PPR) repeat-containi... 32 0.16
At5g40530.2 68418.m04918 expressed protein contains Pfam profile... 29 1.1
At5g40530.1 68418.m04919 expressed protein contains Pfam profile... 29 1.1
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 28 2.6
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 28 2.6
At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containi... 27 4.5
At4g04340.3 68417.m00621 early-responsive to dehydration protein... 27 7.8
At4g04340.2 68417.m00620 early-responsive to dehydration protein... 27 7.8
At4g04340.1 68417.m00619 early-responsive to dehydration protein... 27 7.8
At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH... 27 7.8
At1g15030.1 68414.m01796 expressed protein 27 7.8
>At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B)
Length = 140
Score = 136 bits (329), Expect = 7e-33
Identities = 63/106 (59%), Positives = 85/106 (80%)
Frame = -1
Query: 330 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 151
IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76
Query: 150 ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNXINGLQLTQP 13
ERERR ++VP+ SA++ D I+VD +T +ML L + +G+ +P
Sbjct: 77 ERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAVEP 122
>At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S
ribosomal protein S17, Lycopersicon esculentum,
EMBL:AF161704
Length = 141
Score = 135 bits (326), Expect = 2e-32
Identities = 63/106 (59%), Positives = 84/106 (79%)
Frame = -1
Query: 330 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 151
IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76
Query: 150 ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNXINGLQLTQP 13
ERERR ++VP+ SA++ D I+VD +T +ML L + G+ +P
Sbjct: 77 ERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEP 122
>At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S
ribosomal protein S17, Lycopersicon esculentum,
EMBL:AF161704
Length = 141
Score = 135 bits (326), Expect = 2e-32
Identities = 63/106 (59%), Positives = 84/106 (79%)
Frame = -1
Query: 330 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 151
IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76
Query: 150 ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNXINGLQLTQP 13
ERERR ++VP+ SA++ D I+VD +T +ML L + G+ +P
Sbjct: 77 ERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEP 122
>At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A)
Length = 141
Score = 134 bits (323), Expect = 3e-32
Identities = 63/106 (59%), Positives = 83/106 (78%)
Frame = -1
Query: 330 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 151
IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76
Query: 150 ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNXINGLQLTQP 13
ERERR ++VP+ SA++ D I+VD +T +ML L + G+ P
Sbjct: 77 ERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAVDP 122
>At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) similar
to 40S ribosomal protein S17 GB:AAD50774 [Lycopersicon
esculentum]
Length = 140
Score = 133 bits (321), Expect = 6e-32
Identities = 62/101 (61%), Positives = 83/101 (82%)
Frame = -1
Query: 330 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 151
IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76
Query: 150 ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNXINGL 28
ERERR ++VP+ SA++ D ++VD +T +ML L + I G+
Sbjct: 77 ERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGI 117
>At1g25360.1 68414.m03146 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 790
Score = 32.3 bits (70), Expect = 0.16
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -1
Query: 216 THLMRRLRHSQVRGISIKLQEEERE-RRDNYVPEVSALEHDIIEVDPDTKDML 61
T L+ H + + I LQ+ +E RR YVP+ S + HD +E D +DML
Sbjct: 668 TFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHD-VESDGHKEDML 719
>At5g40530.2 68418.m04918 expressed protein contains Pfam profile
PF05148: Protein of unknown function (DUF691)
Length = 301
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 14 GCVSCRPLXLLKSSIFNISLVSGSTSMMSCSRADTS 121
GC R +K+ +F+ LVS + S+++C ++TS
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177
>At5g40530.1 68418.m04919 expressed protein contains Pfam profile
PF05148: Protein of unknown function (DUF691)
Length = 287
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 14 GCVSCRPLXLLKSSIFNISLVSGSTSMMSCSRADTS 121
GC R +K+ +F+ LVS + S+++C ++TS
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 28.3 bits (60), Expect = 2.6
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -1
Query: 309 LTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVR-GISIKLQEEERERR 136
LTL +D ICEE A +K + + L + L ++R + ++LQ EE++ R
Sbjct: 679 LTLAYDIKDLICEEGAEFLSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKKLR 737
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 28.3 bits (60), Expect = 2.6
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -1
Query: 309 LTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVR-GISIKLQEEERERR 136
LTL +D ICEE A +K + + L + L ++R + ++LQ EE++ R
Sbjct: 679 LTLAYDIKDLICEEGAEFLSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKKLR 737
>At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 612
Score = 27.5 bits (58), Expect = 4.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 168 IKLQEEERERRDNYVPEVSALEHDIIEVDPD 76
+K EEE R+ YVP+ S + HD+ E + +
Sbjct: 508 LKKLEEEMRIRNGYVPDTSWILHDMDEQEKE 538
>At4g04340.3 68417.m00621 early-responsive to dehydration
protein-related / ERD protein-related similar to ERD4
protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 772
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -1
Query: 120 EVSALEHDIIEVDPDTKDMLKMLDFNXINGLQLTQPATQV 1
+V A+EH I EVD +K++ + + N +N + PA+ V
Sbjct: 288 KVDAIEHYIAEVDKTSKEIAEERE-NVVNDQKSVMPASFV 326
>At4g04340.2 68417.m00620 early-responsive to dehydration
protein-related / ERD protein-related similar to ERD4
protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 772
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -1
Query: 120 EVSALEHDIIEVDPDTKDMLKMLDFNXINGLQLTQPATQV 1
+V A+EH I EVD +K++ + + N +N + PA+ V
Sbjct: 288 KVDAIEHYIAEVDKTSKEIAEERE-NVVNDQKSVMPASFV 326
>At4g04340.1 68417.m00619 early-responsive to dehydration
protein-related / ERD protein-related similar to ERD4
protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 772
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -1
Query: 120 EVSALEHDIIEVDPDTKDMLKMLDFNXINGLQLTQPATQV 1
+V A+EH I EVD +K++ + + N +N + PA+ V
Sbjct: 288 KVDAIEHYIAEVDKTSKEIAEERE-NVVNDQKSVMPASFV 326
>At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH7)
identical to SP|Q9SMV7 DNA mismatch repair protein
MSH6-2 (AtMsh6-2) (MutS homolog 7) {Arabidopsis
thaliana}; GC donor splice site at exon 11
Length = 1109
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 317 IQD*HLILIQIKEYVKKSLSFLPSLLGIKLL 225
+ D +L +IK V+ S S LP+LLG K+L
Sbjct: 635 LPDLERLLGRIKSSVRSSASVLPALLGKKVL 665
>At1g15030.1 68414.m01796 expressed protein
Length = 360
Score = 26.6 bits (56), Expect = 7.8
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = -2
Query: 257 FLPSLLGIKLL-DLPHI**GVSDTRKCEESLSNFRKRSVRGVTTMSQKCL 111
++PSL GI++ D+ + + R+ EES S+FR S G ++ S++ L
Sbjct: 119 YVPSLSGIQVYADVDALTSSLQARRQGEESESDFRDSSSEGSSSESERGL 168
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,833,925
Number of Sequences: 28952
Number of extensions: 158659
Number of successful extensions: 449
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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