Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_F11
(821 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 237 2e-63
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 54 2e-08
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 54 2e-08
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 7.4
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom... 26 7.4
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 9.8
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 25 9.8
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 25 9.8
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 237 bits (579), Expect = 2e-63
Identities = 111/217 (51%), Positives = 146/217 (67%), Gaps = 1/217 (0%)
Frame = -3
Query: 702 LFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 523
LF RP++F IGQ IQP RDLSRFV+WP+YIR+QR++ +L RLKVPP I QF +TLDK
Sbjct: 26 LFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKN 85
Query: 522 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXKR-PNTIRSGTNTVTKLVEK 346
TA +FK+L KYRPET + P ++ G N V L+E
Sbjct: 86 TATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALIEA 145
Query: 345 KKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVES 166
KKA+LV+IA DVDPIELV+FLPALC+KMGVPY IVK K+RLG ++H+KT LA+T V
Sbjct: 146 KKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLAVTEVRE 205
Query: 165 GDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKS 55
D+ + +V A+ NF+ +Y+E R+ WGGG++G K+
Sbjct: 206 EDKNELASIVSAVDANFSAKYDESRRKWGGGIMGGKT 242
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 54.0 bits (124), Expect = 2e-08
Identities = 23/56 (41%), Positives = 34/56 (60%)
Frame = -3
Query: 387 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 220
+R G N TK + + ++ +V+A D +PIE++L LP LC VPY V K+ LG
Sbjct: 32 LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 54.0 bits (124), Expect = 2e-08
Identities = 33/100 (33%), Positives = 47/100 (47%)
Frame = -3
Query: 387 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 208
I G V K V K + LV++A D+ P++++ +P LC VPY K LG +
Sbjct: 54 ILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASN 113
Query: 207 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRK 88
K T + V G + SKV E + E YEE+ K
Sbjct: 114 TKRPTSCVMI-VPGGKKKDMSKVEE-----YKESYEEIIK 147
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 594 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 493
KAVL LK P IN F + L + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496
>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 188
Score = 25.8 bits (54), Expect = 7.4
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 391 YHPIRHKHSHQAGREEEGAACGHR 320
+ P HKH++ +EE +C HR
Sbjct: 149 FQPNGHKHTYAEMTDEERNSCSHR 172
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 9.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 610 PHPAPEGCTSASSESAPSDQPIYPDTGQDY 521
PHP SA S ++P P+ P T +DY
Sbjct: 355 PHPRVFSANSAFSTTSPP--PLTPSTSRDY 382
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 9.8
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = +1
Query: 412 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 582
L F L +S Q FP FS L+NL + ++ Q L + R +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 25.4 bits (53), Expect = 9.8
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -3
Query: 384 RSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKM 262
+SG+ +T+ + +V I + +D +E LP LC K+
Sbjct: 378 KSGSRLLTRRLCAPSTNIVEINNRLDLVEKFKLLPELCSKV 418
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,757,342
Number of Sequences: 5004
Number of extensions: 52115
Number of successful extensions: 167
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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