Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_F11
(821 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 270 6e-73
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 267 7e-72
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 54 1e-07
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45... 52 3e-07
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45... 52 3e-07
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45... 52 5e-07
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45... 47 2e-05
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi... 36 0.032
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi... 36 0.032
At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C) 35 0.057
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C) 35 0.057
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C) 35 0.057
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 29 4.9
At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transfera... 29 4.9
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 270 bits (663), Expect = 6e-73
Identities = 126/216 (58%), Positives = 159/216 (73%)
Frame = -3
Query: 702 LFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 523
LFE+RPK F IG + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK
Sbjct: 23 LFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKN 82
Query: 522 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEKK 343
A LFK+L KYRPE +P ++ G N VT L+E+
Sbjct: 83 LATSLFKVLLKYRPEDKAAKKERLVKKAQAEAEGKPSESK-KPIVVKYGLNHVTYLIEQN 141
Query: 342 KAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESG 163
KAQLVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+KT +CL LT V++
Sbjct: 142 KAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTASCLCLTTVKNE 201
Query: 162 DRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKS 55
D+ FSK++EAIK NFN++YEE RK WGGG++G+KS
Sbjct: 202 DKLEFSKILEAIKANFNDKYEEYRKKWGGGIMGSKS 237
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 267 bits (654), Expect = 7e-72
Identities = 126/216 (58%), Positives = 157/216 (72%)
Frame = -3
Query: 702 LFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 523
LFE+RPK F IG + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK
Sbjct: 22 LFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKN 81
Query: 522 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEKK 343
A LFKIL KYRPE +P ++ G N VT L+E+
Sbjct: 82 LATSLFKILLKYRPEDKAAKKERLLNKAQAEAEGKPAESK-KPIVVKYGLNHVTYLIEQN 140
Query: 342 KAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESG 163
KAQLVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+KT L LT V++
Sbjct: 141 KAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTAAALCLTTVKNE 200
Query: 162 DRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKS 55
D+ FSK++EAIK NFN++YEE RK WGGG++G+KS
Sbjct: 201 DKLEFSKILEAIKANFNDKYEEYRKKWGGGIMGSKS 236
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 54.0 bits (124), Expect = 1e-07
Identities = 26/100 (26%), Positives = 51/100 (51%)
Frame = -3
Query: 387 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 208
++ G V K + + + L VIA ++ PI+++ LP LC + GVPY V K L
Sbjct: 51 LKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGA 110
Query: 207 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRK 88
K TC L ++ ++ + +KT++ + +++++
Sbjct: 111 TKRPTCCVLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKE 150
>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = -3
Query: 387 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 214
++ G N TK + + ++ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94
Query: 213 VHRKTCTCLALTNVESGDRASFSKVVEAIK 124
V R C +N S ++ + +AI+
Sbjct: 95 VTRPVIACSVTSNEASQLKSQIQHLKDAIE 124
>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = -3
Query: 387 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 214
++ G N TK + + ++ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94
Query: 213 VHRKTCTCLALTNVESGDRASFSKVVEAIK 124
V R C +N S ++ + +AI+
Sbjct: 95 VTRPVIACSVTSNEASQLKSQIQHLKDAIE 124
>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 52.0 bits (119), Expect = 5e-07
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = -3
Query: 387 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 214
++ G N TK + + ++ +V+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACD 94
Query: 213 VHRKTCTCLALTNVESGDRASFSKVVEAIK 124
V R C +N S ++ + +AI+
Sbjct: 95 VTRPVIACSVTSNEASQLKSQIQHLKDAIE 124
>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 160
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = -3
Query: 369 TVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTC 196
+ TK + + ++ VV+A D +P+E++L LP L VPY V K LG V R
Sbjct: 73 SATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI 132
Query: 195 TCLALTNVESGDRASFSKVVEAIK 124
C +N S ++ + +AI+
Sbjct: 133 ACSVTSNEASQLKSQIQHLKDAIE 156
>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 35.9 bits (79), Expect = 0.032
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = -3
Query: 378 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 220
G + KL+EK+ AQLVV+A D + + V + ALC V V LG
Sbjct: 47 GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLG 99
>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 35.9 bits (79), Expect = 0.032
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = -3
Query: 378 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 220
G + KL+EK+ AQLVV+A D + + V + ALC V V LG
Sbjct: 47 GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLG 99
>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 35.1 bits (77), Expect = 0.057
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -3
Query: 378 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 220
G + KL+EK+ AQL V+A D + + V + ALC + V LG
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99
>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 35.1 bits (77), Expect = 0.057
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -3
Query: 378 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 220
G + KL+EK+ AQL V+A D + + V + ALC + V LG
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99
>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 35.1 bits (77), Expect = 0.057
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -3
Query: 378 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 220
G + KL+EK+ AQL V+A D + + V + ALC + V LG
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99
>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
family protein (MSS2) similar to SMC-related protein MSS2
[Arabidopsis thaliana] GI:9965743; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1053
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 382 SDGIGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 540
+ G+ P+ R +F + +S QP P CF L P L LE + +CS++ +
Sbjct: 971 NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021
>At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transferase
family protein glucuronosyl transferase homolog,
Lycopersicon esculentum, PIR:S39507 ;contains Pfam
profile: PF00201 UDP-glucoronosyl and UDP-glucosyl
transferase
Length = 460
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -2
Query: 244 CQGQVPPRCTCTPQDMHMLSSNKCGVW*PRLLLEGRGSHQDELQRALRGAPQALG 80
C+G VP CT D H+ + VW +LLE + E+++ LR G
Sbjct: 362 CEG-VPMICTSCFTDQHVNARYIVDVWRVGMLLERSKMEKKEIEKVLRSVMMEKG 415
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,213,655
Number of Sequences: 28952
Number of extensions: 303302
Number of successful extensions: 932
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1882599200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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