Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_F09
         (729 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)                      131   6e-31
SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0)                109   2e-24
SB_58| Best HMM Match : Prenyltrans (HMM E-Value=1.4e-16)              67   2e-11
SB_18098| Best HMM Match : Prenyltrans (HMM E-Value=0.11)              42   5e-04
SB_56371| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.41 
SB_6395| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.3  
SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05)                    31   1.3  
SB_59015| Best HMM Match : Arif-1 (HMM E-Value=0.62)                   29   3.9  
SB_25189| Best HMM Match : Drf_FH1 (HMM E-Value=4.1)                   29   5.1  
SB_31339| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_33965| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_13015| Best HMM Match : rve (HMM E-Value=0.00017)                   28   8.9  

>SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1020

 Score =  131 bits (316), Expect = 6e-31
 Identities = 66/144 (45%), Positives = 88/144 (61%), Gaps = 18/144 (12%)
 Frame = -1

Query: 711  AMYDRLDAVDIEGIVRYIVSLQQEDGSFYGDKWGEIDXRFSFCAVMCLSLLQ-------- 556
            A+ D+LD ++ E  + ++ S Q +DG F      +    ++  AV  L +LQ        
Sbjct: 867  ALMDKLDMMNREEAIDFVKSCQHDDGGFGASVSHDPHLLYTLSAVQSLCMLQWLTLPTLQ 926

Query: 555  ----------RLDAIDINKTVEFVLSCMNFDGGFGSKPGSESHAGLIYCCVGTLSICKRM 406
                      RLDAI+++K VE+V+ CMNFDGGFG +PGSESHAG IYCC+G LSI   +
Sbjct: 927  IVIICSLPKDRLDAINVDKAVEYVVDCMNFDGGFGCRPGSESHAGQIYCCLGALSITHSL 986

Query: 405  DALHADELAWWLCERQLPSGGLNG 334
              ++ D L WWLCERQLPSGGLNG
Sbjct: 987  HHVNVDMLGWWLCERQLPSGGLNG 1010



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 17/58 (29%), Positives = 33/58 (56%)
 Frame = -1

Query: 588  FCAVMCLSLLQRLDAIDINKTVEFVLSCMNFDGGFGSKPGSESHAGLIYCCVGTLSIC 415
            +  +  ++L+ +LD ++  + ++FV SC + DGGFG+    + H  L+Y      S+C
Sbjct: 860  YWGLTAMALMDKLDMMNREEAIDFVKSCQHDDGGFGASVSHDPH--LLYTLSAVQSLC 915


>SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0)
          Length = 2376

 Score =  109 bits (263), Expect = 2e-24
 Identities = 60/214 (28%), Positives = 105/214 (49%), Gaps = 14/214 (6%)
 Frame = -1

Query: 726 AVQVXAMYDRLDAVDIEGIVRYIVSLQQEDGSFYGDKWGEIDXRFSFCAVMCLSLLQRLD 547
           A  +    +  + +D   +  +I+  +  DG F     GE+D R ++CA +  S+   L 
Sbjct: 135 AAVILGTEEAYNVIDRPALYNFIMRCRNLDGGFRMHVDGEVDIRGAYCAAVSASITNILT 194

Query: 546 AIDINKTVEFVLSCMNFDGGFGSKPGSESHAGLIYCCVGTLSICKRMDALHADELAWWLC 367
                 T +++ SC  ++GGF  +PG E+H G  +C    L +  +   ++  +L  W  
Sbjct: 195 PELFAGTADWLKSCQTYEGGFSGEPGLEAHGGYTFCGFACLVLLGKEHIVNLKQLLRWAV 254

Query: 366 ERQLPS-GGLNGRPEKLPDLCYSWWVMSSLSMLNRI------------HWV-DKKSLEEF 229
            RQ+ + GG  GR  KL D CYS+W+     +L+ +             W+ D+ +L+++
Sbjct: 255 NRQMKAEGGFQGRTNKLVDGCYSYWLGGLFPLLHSVLEAKQDNAISQEKWMFDQVALQDY 314

Query: 228 ILACQDYETGGFSDRPGDITDPFHTLFGLAGLSL 127
           +L    Y  GG  D+PG   D +HT + L+GLS+
Sbjct: 315 VLVQCQYHAGGLIDKPGKSRDFYHTCYCLSGLSV 348



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 37/143 (25%), Positives = 59/143 (41%)
 Frame = -1

Query: 537 INKTVEFVLSCMNFDGGFGSKPGSESHAGLIYCCVGTLSICKRMDALHADELAWWLCERQ 358
           ++  V F+  C + +GGFG  P    H    Y  V  L   +  + +    L  ++   +
Sbjct: 103 VSDIVGFLRRCQHPEGGFGGGPNQVPHLAPTYAAV-ILGTEEAYNVIDRPALYNFIMRCR 161

Query: 357 LPSGGLNGRPEKLPDLCYSWWVMSSLSMLNRIHWVDKKSLEEFILACQDYETGGFSDRPG 178
              GG     +   D+  ++    S S+ N +         +++ +CQ YE GGFS  PG
Sbjct: 162 NLDGGFRMHVDGEVDIRGAYCAAVSASITNILTPELFAGTADWLKSCQTYE-GGFSGEPG 220

Query: 177 DITDPFHTLFGLAGLSLLGNTSI 109
                 +T  G A L LLG   I
Sbjct: 221 LEAHGGYTFCGFACLVLLGKEHI 243


>SB_58| Best HMM Match : Prenyltrans (HMM E-Value=1.4e-16)
          Length = 713

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
 Frame = -1

Query: 564 LLQRLDAIDINKTVEFVLSCMNFDGGFGSKPGSESHAGLIYCCVGTLSICKRMDAL---- 397
           +L     I+I K V+++ +  ++D G    P  ESH G  +C + +LS+  ++D +    
Sbjct: 138 ILNDWSGINIEKAVQYIRNSQSYDYGIAQGPHLESHGGSTFCAIASLSLMNQLDKVFTKS 197

Query: 396 HADELAWWLCERQLPSGGLNGRPEKLPDLCYSWWVMSSLSMLNRIHW 256
             ++L  W   RQ    G +GRP K  D CY++WV +SL +     W
Sbjct: 198 QLEKLIRWCIFRQ--KSGFHGRPNKPVDTCYAFWVGASLEVDKEFVW 242



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = -1

Query: 687 VDIEGIVRYIVSLQQEDGSFYGDKWGEIDXRFSFCAVMCLSLLQRLDAIDINKTVEFVLS 508
           ++IE  V+YI + Q  D         E     +FCA+  LSL+ +LD +     +E ++ 
Sbjct: 145 INIEKAVQYIRNSQSYDYGIAQGPHLESHGGSTFCAIASLSLMNQLDKVFTKSQLEKLIR 204

Query: 507 CMNF--DGGFGSKP 472
              F    GF  +P
Sbjct: 205 WCIFRQKSGFHGRP 218


>SB_18098| Best HMM Match : Prenyltrans (HMM E-Value=0.11)
          Length = 62

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
 Frame = -1

Query: 453 GLIYCCVGTLSICKRMDALHA----DELAWWLCERQLPSGGLNGRPEKLPDLCYSWWVMS 286
           G  +C + +LS+  ++D +      ++L  W   RQ    G +GRP K  D CY++WV +
Sbjct: 2   GSTFCAIASLSLMNQLDKVFTKSQLEKLIRWCIFRQ--KSGFHGRPNKPVDTCYAFWVGA 59

Query: 285 SL 280
           SL
Sbjct: 60  SL 61


>SB_56371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1035

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -1

Query: 318 PDLCYSWWVMSSLSMLNRIHWVDKKSLEEFILACQDY 208
           P LC+S W++ S  +++ +H++ + +L   +L   DY
Sbjct: 87  PPLCFSIWMVPSSRIVSHLHYIFRPTLATRVLVAVDY 123


>SB_6395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1093

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 354 PSGGLNGRPEKLPDLCYSWWVMSSLSMLNRIHWVDKKSLEEF 229
           P     GR   +P  CY  +V   LS ++ + WV K  +E F
Sbjct: 560 PPKSKGGRLSLIPPPCYGQFVNKPLSNIDLLKWVTKLGVEHF 601


>SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05)
          Length = 763

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -1

Query: 582 AVMCLSLLQRLDAIDINKTVEFVLSCMNFDGGFGSKPGSESHA 454
           AV+  S L +L    I KTV  +L+ M  +GGF ++P    HA
Sbjct: 120 AVVASSTLHKLIEASITKTVPTILANMLINGGFVAQPTFLPHA 162


>SB_59015| Best HMM Match : Arif-1 (HMM E-Value=0.62)
          Length = 526

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = +3

Query: 441 SKLDQHGFPIQVWNRIHHQSSCN*AQT 521
           S+L QHG  ++++N IHH+ + N AQT
Sbjct: 244 SRLGQHGH-VRLYNTIHHRPTGNAAQT 269


>SB_25189| Best HMM Match : Drf_FH1 (HMM E-Value=4.1)
          Length = 570

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = +3

Query: 603 LFHPICL-----HKNYHLLAVRKLCI*QFLQYQQHLIYHTSPXPVQH 728
           L H +C      ++N+    + KLC    LQY+ H  Y+TS   V H
Sbjct: 236 LLHKLCYCVALQYRNHCHYLLHKLCYCVALQYRSHCHYYTSCATVWH 282


>SB_31339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/47 (34%), Positives = 18/47 (38%)
 Frame = -1

Query: 396 HADELAWWLCERQLPSGGLNGRPEKLPDLCYSWWVMSSLSMLNRIHW 256
           HA    WW   R+ P G        LP L Y      SL+   R HW
Sbjct: 134 HASAARWWRW-RECPKGDWQYFEHCLPALTYPHSTSLSLTQKTRNHW 179


>SB_33965| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 528

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 335 VDRKNCQICATLGGSCLHFQC 273
           +DR  C+ C+ L G+C H  C
Sbjct: 289 LDRNGCEECSDLQGTCAHALC 309


>SB_13015| Best HMM Match : rve (HMM E-Value=0.00017)
          Length = 960

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -2

Query: 545 PSTSTRLWSLCSVA*TLMVDSVPNLDRKAMLV*FTAVWVHCRYASA 408
           P+T+ R   LC      M    P  DR  +L   T V +HCR+  A
Sbjct: 729 PATALRAPGLCKSRLLAMEGYRPQKDRLGLLETDTPVAIHCRHIMA 774


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,999,523
Number of Sequences: 59808
Number of extensions: 573673
Number of successful extensions: 1236
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)