Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_F08
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe...    76   3e-15
SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyce...    45   8e-06
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    28   0.70 
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    28   0.92 
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    26   3.7  
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    25   4.9  

>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 182

 Score = 76.2 bits (179), Expect = 3e-15
 Identities = 32/68 (47%), Positives = 48/68 (70%)
 Frame = -1

Query: 508 KWLTYWXVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYLPTEYNGSLVIYYRIIRPY 329
           +WLTY+ V +  +++EY+S  I+ + P+YWLLK IF+IW  LP ++NG+ +IY  +IRPY
Sbjct: 86  QWLTYYLVTSFLNVIEYWSQLILYYVPVYWLLKAIFLIWLALP-KFNGATIIYRHLIRPY 144

Query: 328 YQKHHGRI 305
              H  RI
Sbjct: 145 ITPHVIRI 152


>SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 44.8 bits (101), Expect = 8e-06
 Identities = 20/68 (29%), Positives = 29/68 (42%)
 Frame = -1

Query: 502 LTYWXVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYLPTEYNGSLVIYYRIIRPYYQ 323
           + YW VY C +  E      + W P Y   K +F +W   P    G+  IY   I P+  
Sbjct: 104 MAYWCVYGCVTAAESILGRFLSWVPFYSTSKIVFWLWLLNP-RTQGAAFIYASYISPFLS 162

Query: 322 KHHGRIDD 299
            H   I++
Sbjct: 163 DHKAAINN 170


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 28.3 bits (60), Expect = 0.70
 Identities = 12/50 (24%), Positives = 30/50 (60%)
 Frame = +2

Query: 206 LFKCLAESCHCFINRFIEVFNDIIHGICVGHIIDTTMVLLVVRTNDTVVD 355
           + KCL ++      R +++ N+I++   +  I+ T M+ L+V ++++ V+
Sbjct: 332 ILKCLVDTDTSIRLRALDLVNEIVNKENIRTIVKTLMLQLIVSSDESAVE 381


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = -1

Query: 337 RPYYQKHHGRIDDMANTDPMNDIIKDLNESIDKTMTAFS----KTLKKL*TYLVSEAG 176
           +P+Y +HH      AN +P   I+ D+ ++ D  M++F       LKKL T ++  AG
Sbjct: 660 QPFYYEHHKSHVPFANNEP---ILLDIPQNYD-NMSSFKPLAHDVLKKLCTIILFHAG 713


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 478 CFSIVEYFSDFIVGWFPLYWLLKC 407
           C  ++EYF  F    + LY LL C
Sbjct: 337 CLRVIEYFRRFGYNDYQLYLLLSC 360


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -1

Query: 496 YWXVYACFSIVEY--FSDFIVGWFPLYWLLKCIFVIWCYLP 380
           Y   Y  FSI  +  FSDF++     YW+ + +   W Y P
Sbjct: 146 YGYFYLFFSIALFLLFSDFLI-----YWIHRALHHRWLYAP 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,125,720
Number of Sequences: 5004
Number of extensions: 43998
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)