Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_F08
         (508 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54916| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=4.76441e-44)     93   2e-19
SB_35466| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_45400| Best HMM Match : MAM (HMM E-Value=0)                         28   5.1  
SB_43444| Best HMM Match : WSC (HMM E-Value=0.084)                     27   8.9  

>SB_54916| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=4.76441e-44)
          Length = 210

 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 34/69 (49%), Positives = 50/69 (72%)
 Frame = -1

Query: 508 KWLTYWXVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYLPTEYNGSLVIYYRIIRPY 329
           +WL YW V+A F+IVE+FSD ++ WFPLY+L K IF+ WC  P  +NGS  +Y ++I+P+
Sbjct: 91  QWLIYWVVFASFNIVEFFSDILLSWFPLYFLTKLIFLGWCMAPVSWNGSDTLYQKVIKPF 150

Query: 328 YQKHHGRID 302
             +H  +ID
Sbjct: 151 VLRHQSQID 159


>SB_35466| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 829

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 478 CFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYLPTEYNGSLVIY 350
           C ++V       +G F +++  +C     CY+P + NGS  IY
Sbjct: 374 CVTVVHDPPFLKIGEFNIFYDKECTLEHVCYVPVQLNGSESIY 416


>SB_45400| Best HMM Match : MAM (HMM E-Value=0)
          Length = 257

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 409 CIFVIWCYLPTEYNGSLVIYYRIIRP 332
           C+  + CY  + YN +  +YY  +RP
Sbjct: 162 CVEAVGCYRDSGYNRAFPVYYADLRP 187


>SB_43444| Best HMM Match : WSC (HMM E-Value=0.084)
          Length = 155

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
 Frame = +1

Query: 280 WDLCWPYHRYDHGAS--GSKDE*YG 348
           W  CW  H+  H A   GS D+ YG
Sbjct: 105 WGECWAGHKSQHNAKRHGSSDQCYG 129


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,667,428
Number of Sequences: 59808
Number of extensions: 321049
Number of successful extensions: 1016
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)