Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_F08
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   3.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   3.2  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   7.3  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   7.3  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              21   7.3  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   7.3  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 200 LQLFKCLAESCHCFINRFIEVFNDII 277
           L  F+C+A S    +NRF +   D+I
Sbjct: 458 LMFFECIAISWAFGVNRFYDGIRDMI 483


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 200 LQLFKCLAESCHCFINRFIEVFNDII 277
           L  F+C+A S    +NRF +   D+I
Sbjct: 511 LMFFECIAISWAFGVNRFYDGIRDMI 536


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 360 W*STTVSFVLTTRS 319
           W STT SFVL  R+
Sbjct: 349 WISTTTSFVLNNRA 362


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 307 IDDMANTDPMNDIIKDLNESIDKTMTAF 224
           I D+   D +ND I  LN S    +TA+
Sbjct: 116 ISDLFVFDDLNDYINRLNYSAFVNLTAY 143


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 373 IQSAGSTRSRRCTLTASTMETSRR*NRKSTPR 468
           I +  STR R       ++ +    N +STPR
Sbjct: 236 INAVQSTRHREADDAEESVSSETNHNERSTPR 267


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 373 IQSAGSTRSRRCTLTASTMETSRR*NRKSTPR 468
           I +  STR R       ++ +    N +STPR
Sbjct: 236 INAVQSTRHREADDAEESVSSETNHNERSTPR 267


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -3

Query: 176 ETRLKCRFNAIKKNYN 129
           + +LKC FN + + +N
Sbjct: 65  DEKLKCYFNCVLEKFN 80


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 373 IQSAGSTRSRRCTLTASTMETSRR*NRKSTPR 468
           I +  STR R       ++ +    N +STPR
Sbjct: 236 INAVQSTRHREADDAEESVSSETNHNERSTPR 267


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,191
Number of Sequences: 438
Number of extensions: 3400
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)