Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_F06
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom...    39   7e-04
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.1  
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M...    26   4.3  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   9.9  

>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
 Frame = -2

Query: 447 ALKNM-LNDDRKTMELVLSVNGALRGLIRELTGNDIAKQCQAAGCICNLA-LGDSRAGVA 274
           AL N+ +N + K   LV+ +NG L  LIR++    +  QC A GCI NLA L ++++ +A
Sbjct: 108 ALGNLAVNAENKA--LVVKLNG-LDLLIRQMMSPHVEVQCNAVGCITNLATLDENKSKIA 164

Query: 273 VTKSAGP 253
            + + GP
Sbjct: 165 HSGALGP 171



 Score = 26.6 bits (56), Expect = 3.2
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
 Frame = -2

Query: 498 IVNILKTK-TSISVTELSALKNMLNDDRKTMELVLSVNGALRGLIRELTGNDIAKQCQAA 322
           +V++L +  T +     +++ N+  D      L  S    +R LI+ +  +    QCQAA
Sbjct: 213 LVSLLPSSDTDVQYYCTTSISNIAVDAVHRKRLAQSEPKLVRSLIQLMDTSSPKVQCQAA 272

Query: 321 GCICNLALGDSRAGVAVTKS-AGPYLIAAL 235
             + NLA  D R  + + +S A P L+  L
Sbjct: 273 LALRNLA-SDERYQIEIVQSNALPSLLRLL 301


>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 602

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 453 LSALKNMLNDDRKTMELVLSVNGALRGLIRE 361
           L    N  +DD  T EL++ + G L GL+ E
Sbjct: 458 LQKFSNFSSDDETTRELIILILGLLLGLVEE 488


>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 382

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -2

Query: 414 TMELVLSVNGALRGLIRELTGNDIAKQCQAAGCICNL 304
           T+ LVL + G ++  ++ LTG  I  + +++  I N+
Sbjct: 66  TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 102



 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -2

Query: 414 TMELVLSVNGALRGLIRELTGNDIAKQCQAAGCICNL 304
           T+ LVL + G ++  ++ LTG  I  + +++  I N+
Sbjct: 142 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 178



 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -2

Query: 414 TMELVLSVNGALRGLIRELTGNDIAKQCQAAGCICNL 304
           T+ LVL + G ++  ++ LTG  I  + +++  I N+
Sbjct: 218 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 254



 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -2

Query: 414 TMELVLSVNGALRGLIRELTGNDIAKQCQAAGCICNL 304
           T+ LVL + G ++  ++ LTG  I  + +++  I N+
Sbjct: 294 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 330


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 129 AVIIKLIFITAPFENQLFFNAPHFLYTPKT 40
           A++ K I    P + +  FNAP+ +  P++
Sbjct: 125 ALVAKCIVFNCPEDKENIFNAPNIIIGPRS 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,422,417
Number of Sequences: 5004
Number of extensions: 43492
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)