Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_F06
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0153 - 1352982-1353731                                           31   0.63 
01_05_0162 + 18759647-18759663,18760128-18760131,18760270-187606...    31   0.83 
11_06_0506 - 24380469-24380632,24381737-24383893,24384488-243845...    30   1.5  
10_06_0162 - 11348250-11349531,11349571-11349671                       28   7.7  

>01_01_0153 - 1352982-1353731
          Length = 249

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 24/58 (41%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
 Frame = -2

Query: 351 NDIAKQCQAAGCICNLALG-DSRAGVAV------TKSAGPYLIAALDNLTTELAVRCC 199
           ND  KQC AA   C  A G D   G  V      T   GP   AALD L+ E   +CC
Sbjct: 64  NDEVKQCAAACKECVEAPGGDFNGGAFVCSDWFSTVDPGPKCTAALDGLSMERPWKCC 121


>01_05_0162 +
           18759647-18759663,18760128-18760131,18760270-18760617,
           18760801-18761016,18763367-18763435,18763560-18764209,
           18764993-18765089,18765170-18765223,18765305-18765435,
           18766818-18767008,18767937-18768574
          Length = 804

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 21/59 (35%), Positives = 27/59 (45%)
 Frame = -2

Query: 390 NGALRGLIRELTGNDIAKQCQAAGCICNLALGDSRAGVAVTKSAGPYLIAALDNLTTEL 214
           +G L  ++R L   DI  +  AAG I NLAL  S  G  V     P L    ++L   L
Sbjct: 148 SGMLTRMVRFLDDEDIKVKEAAAGIISNLALSHSNHGALVEAGVIPKLKGNKESLDWNL 206


>11_06_0506 -
           24380469-24380632,24381737-24383893,24384488-24384541,
           24384543-24384597,24384914-24384916,24385192-24385231,
           24385576-24385632,24388124-24388412,24389764-24389771,
           24390633-24390688,24391207-24391488,24391651-24391811,
           24391887-24392121,24392860-24392943,24393022-24393117,
           24393333-24394055,24396523-24396987
          Length = 1642

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -2

Query: 498 IVNILK-TKTSISVTELSALKNMLNDDRKTMELVLSVNGALRGLIRELTGNDIAKQCQAA 322
           I++ LK     I V   S LKN+    +      LS +  +  L++ L  + ++ Q  A 
Sbjct: 401 ILDALKHASVDIRVAACSCLKNISRSSKVLSAGKLSCDTFIAPLVQLLYDSSMSVQVAAL 460

Query: 321 GCICNLAL 298
           G ICN+A+
Sbjct: 461 GAICNIAV 468


>10_06_0162 - 11348250-11349531,11349571-11349671
          Length = 460

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +2

Query: 212 ASSVVRLSSAAIRYGPADLVTATPALLSPRARLQMQPAA 328
           A+ V+R ++  +R G  DLV    A++ PR R+++ PAA
Sbjct: 40  AAPVLRRTAELLR-GHPDLVAEINAVIYPRNRVELVPAA 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,891,589
Number of Sequences: 37544
Number of extensions: 259300
Number of successful extensions: 496
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)