Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_F06
         (670 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.     25   2.2  
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            24   5.0  

>L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.
          Length = 229

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 414 TMELVLSVNGALRGLIRELTGNDIAKQCQAAGCICNL 304
           T+ LVL + G ++  ++ LTG  I  + + +  I N+
Sbjct: 66  TLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENV 102



 Score = 25.0 bits (52), Expect = 2.2
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 414 TMELVLSVNGALRGLIRELTGNDIAKQCQAAGCICNL 304
           T+ LVL + G ++  ++ LTG  I  + + +  I N+
Sbjct: 142 TLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENV 178


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 112 KFDNHCFNRMHC 147
           K+D HCF   HC
Sbjct: 735 KYDTHCFALCHC 746


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 611,628
Number of Sequences: 2352
Number of extensions: 10444
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66904800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)