Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_F06
         (670 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47030.1 68416.m05107 F-box family protein contains F-box dom...    33   0.17 
At1g23030.1 68414.m02877 armadillo/beta-catenin repeat family pr...    33   0.23 
At2g39220.1 68415.m04817 patatin family protein similar to patat...    29   2.8  
At1g65350.1 68414.m07413 polyubiquitin, putative similar to poly...    29   2.8  
At4g29800.1 68417.m04243 patatin-related low similarity to patat...    29   3.7  
At3g63200.1 68416.m07100 patatin-related low similarity to patat...    28   4.9  
At5g55510.1 68418.m06914 mitochondrial import inner membrane tra...    28   6.5  
At4g26670.1 68417.m03842 mitochondrial import inner membrane tra...    28   6.5  
At1g53550.1 68414.m06076 F-box family protein similar to F-box f...    28   6.5  

>At3g47030.1 68416.m05107 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 414

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = -2

Query: 249 LIAALDNLTTELAVRCCCF*YIWLSKLQITY*NQTMHSVKAVIIKLIFITAPFENQLFFN 70
           LI     L+ E   RC C    W S L+  Y  +  H + +   +++F    +  +LF++
Sbjct: 39  LIDVFSRLSIEDVARCRCLSRFWSSILRRRYFTELFHKMSSTRPRILFTFLYYGKRLFYS 98

Query: 69  APHFL 55
            P  L
Sbjct: 99  MPQDL 103


>At1g23030.1 68414.m02877 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 612

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 21/83 (25%), Positives = 42/83 (50%)
 Frame = -2

Query: 465 SVTELSALKNMLNDDRKTMELVLSVNGALRGLIRELTGNDIAKQCQAAGCICNLALGDSR 286
           +V+E+ +L     D+R    ++++  GA+  L+  LT  D+A Q  A  C+ NL++ ++ 
Sbjct: 351 AVSEIRSLSKRSTDNR----ILIAEAGAIPVLVNLLTSEDVATQENAITCVLNLSIYENN 406

Query: 285 AGVAVTKSAGPYLIAALDNLTTE 217
             + +   A   ++  L   T E
Sbjct: 407 KELIMFAGAVTSIVQVLRAGTME 429


>At2g39220.1 68415.m04817 patatin family protein similar to
           patatin-like latex allergen [Hevea
           brasiliensis][PMID:10589016]; contains patatin domain
           PF01734
          Length = 499

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 590 TNCYYIDVN*EMKNPTAGALTLVFHPK 510
           T C  +D    M NPTA A+T V H K
Sbjct: 295 TRCVAVDGGLAMSNPTAAAITHVLHNK 321


>At1g65350.1 68414.m07413 polyubiquitin, putative similar to
           polyubiquitin GI:248337 from [Zea mays]
          Length = 294

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -2

Query: 414 TMELVLSVNGALRGLIRELTGNDIAKQCQAAGCICNL 304
           T+ LVL + G ++  ++ LTG  I  + +++G I N+
Sbjct: 217 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSGTIDNV 253


>At4g29800.1 68417.m04243 patatin-related low similarity to patatin
           precursor [Solanum brevidens][GI:563125]; contains
           Patatin domain PF01743
          Length = 525

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 590 TNCYYIDVN*EMKNPTAGALTLVFHPK 510
           T C  +     M NPTA A+T VFH K
Sbjct: 319 TRCVAVGGGLAMSNPTAAAITHVFHNK 345


>At3g63200.1 68416.m07100 patatin-related low similarity to
           patatin-like latex protein allergen Hev b 7 - Hevea
           brasiliensis, EMBL:AF113546; contains patatin domain
           PF01734
          Length = 384

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 590 TNCYYIDVN*EMKNPTAGALTLVFHPK 510
           T+C  +D    M NPTA A+T V H K
Sbjct: 215 TSCSAVDGGLVMNNPTAAAVTHVLHNK 241


>At5g55510.1 68418.m06914 mitochondrial import inner membrane
           translocase subunit Tim17/Tim22/Tim23 family protein
           weak similarity to SP|Q99595 Mitochondrial import inner
           membrane translocase subunit TIM17 A {Homo sapiens};
           contains Pfam profile PF02466: Mitochondrial import
           inner membrane translocase subunit Tim17
          Length = 186

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
 Frame = -2

Query: 417 KTMELVLSVNGALRGLIRELTGNDIAKQCQAAGCICNLALGDSRAGVAVTKS-----AGP 253
           KT  ++  V+  +  L++++ G D A     AGC   LAL    A  A+ +S     A  
Sbjct: 61  KTFAVLSGVHSLVVCLLKQIRGKDDAINVGVAGCCTGLALSFPGAPQAMLQSCLTFGAFS 120

Query: 252 YLIAALDNLTTELA 211
           +++  L+   T LA
Sbjct: 121 FILEGLNKRQTALA 134


>At4g26670.1 68417.m03842 mitochondrial import inner membrane
           translocase subunit Tim17/Tim22/Tim23 family protein
           weak similarity to SP|Q9Z0V8 Mitochondrial import inner
           membrane translocase subunit TIM17 A {Mus musculus};
           contains Pfam profile PF02466: Mitochondrial import
           inner membrane translocase subunit Tim17
          Length = 210

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
 Frame = -2

Query: 417 KTMELVLSVNGALRGLIRELTGNDIAKQCQAAGCICNLALGDSRAGVAVTKS-----AGP 253
           KT  ++  V+  +  L++++ G D A     AGC   LAL    A  A+ +S     A  
Sbjct: 89  KTFAVLSGVHSLVVCLLKQIRGKDDAINVGVAGCCTGLALSFPGAPQALLQSCLTFGAFS 148

Query: 252 YLIAALDNLTTELA 211
           +++  L+   T LA
Sbjct: 149 FILEGLNKRQTALA 162


>At1g53550.1 68414.m06076 F-box family protein similar to F-box
           family protein TIGR_Ath1:At3g23960
          Length = 408

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = -2

Query: 249 LIAALDNLTTELAVRCCCF*YIWLSKLQITY*NQTMHSVKAVIIKLIFITAPFENQLFFN 70
           +I  L  L+ E   RC C   +W S ++    NQ      +   +L+F+      +LFFN
Sbjct: 40  VINILSRLSLECIARCRCVSKLWSSIIRRPNYNQLFPVKSSATPRLLFV-FKVARELFFN 98

Query: 69  APHFLYTP 46
           +    + P
Sbjct: 99  SSPQHFNP 106


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,379,706
Number of Sequences: 28952
Number of extensions: 218802
Number of successful extensions: 451
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)