Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_F04
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 270 9e-74
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 270 9e-74
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 270 9e-74
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 42 1e-04
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 30 0.26
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 26 5.5
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp... 25 7.3
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 270 bits (663), Expect = 9e-74
Identities = 121/170 (71%), Positives = 145/170 (85%)
Frame = -2
Query: 657 HTKKRKGAXKLRSLDYAERHGYIKGXVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIA 478
HT+ RKGA +LR+LD+AERHGYI+G V+ IIHDPGRGAPLA V FR+PY ++T E F+A
Sbjct: 18 HTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVA 77
Query: 477 PEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIG 298
EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++G
Sbjct: 78 TEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVG 137
Query: 297 HNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHK 148
H+ D +TRVKLPSGAKKV+PSS RG+VGIVAGGGRIDKP+LKAGRA+HK
Sbjct: 138 HDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHK 187
Score = 46.4 bits (105), Expect = 4e-06
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = -3
Query: 143 KVKRNCWPYVRGVAMNPVEHP 81
+VKRNCWP RGVAMNPV+HP
Sbjct: 189 RVKRNCWPRTRGVAMNPVDHP 209
Score = 30.3 bits (65), Expect = 0.26
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -1
Query: 76 GGGNHQHIGKASTVQERN 23
GGGNHQH+G ++TV ++
Sbjct: 211 GGGNHQHVGHSTTVPRQS 228
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 270 bits (663), Expect = 9e-74
Identities = 121/170 (71%), Positives = 145/170 (85%)
Frame = -2
Query: 657 HTKKRKGAXKLRSLDYAERHGYIKGXVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIA 478
HT+ RKGA +LR+LD+AERHGYI+G V+ IIHDPGRGAPLA V FR+PY ++T E F+A
Sbjct: 18 HTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVA 77
Query: 477 PEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIG 298
EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++G
Sbjct: 78 TEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVG 137
Query: 297 HNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHK 148
H+ D +TRVKLPSGAKKV+PSS RG+VGIVAGGGRIDKP+LKAGRA+HK
Sbjct: 138 HDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHK 187
Score = 46.4 bits (105), Expect = 4e-06
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = -3
Query: 143 KVKRNCWPYVRGVAMNPVEHP 81
+VKRNCWP RGVAMNPV+HP
Sbjct: 189 RVKRNCWPRTRGVAMNPVDHP 209
Score = 30.3 bits (65), Expect = 0.26
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -1
Query: 76 GGGNHQHIGKASTVQERN 23
GGGNHQH+G ++TV ++
Sbjct: 211 GGGNHQHVGHSTTVPRQS 228
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 270 bits (663), Expect = 9e-74
Identities = 121/170 (71%), Positives = 145/170 (85%)
Frame = -2
Query: 657 HTKKRKGAXKLRSLDYAERHGYIKGXVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIA 478
HT+ RKGA +LR+LD+AERHGYI+G V+ IIHDPGRGAPLA V FR+PY ++T E F+A
Sbjct: 18 HTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVA 77
Query: 477 PEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIG 298
EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++G
Sbjct: 78 TEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVG 137
Query: 297 HNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHK 148
H+ D +TRVKLPSGAKKV+PSS RG+VGIVAGGGRIDKP+LKAGRA+HK
Sbjct: 138 HDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHK 187
Score = 46.4 bits (105), Expect = 4e-06
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = -3
Query: 143 KVKRNCWPYVRGVAMNPVEHP 81
+VKRNCWP RGVAMNPV+HP
Sbjct: 189 RVKRNCWPRTRGVAMNPVDHP 209
Score = 30.3 bits (65), Expect = 0.26
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -1
Query: 76 GGGNHQHIGKASTVQERN 23
GGGNHQH+G ++TV ++
Sbjct: 211 GGGNHQHVGHSTTVPRQS 228
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 41.5 bits (93), Expect = 1e-04
Identities = 24/90 (26%), Positives = 48/90 (53%)
Frame = -2
Query: 426 LEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAK 247
L+ GN P+ +P GT++ + + +L R++G+ A +I D K V+L SG +
Sbjct: 162 LKPGNCFPLRLIPIGTVIHAIGVNPNQKAKLCRSAGSSARIIAF--DGKYAIVRLQSGEE 219
Query: 246 KVLPSSNRGMVGIVAGGGRIDKPILKAGRA 157
+ + ++ +G+V+ + + KAGR+
Sbjct: 220 RKILDTSFATIGVVSNIYWQHRQLGKAGRS 249
Score = 29.1 bits (62), Expect = 0.59
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = -3
Query: 197 VDVLTNLF*KLEGHTTSXKVKRNCW----PYVRGVAMNPVEHP 81
+ V++N++ + H K R+ W P VRG AMNP +HP
Sbjct: 230 IGVVSNIYWQ---HRQLGKAGRSRWLGIRPTVRGTAMNPCDHP 269
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 30.3 bits (65), Expect = 0.26
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +2
Query: 200 PATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRL 370
PAT+P F P F +L SGL V+ +P+ + +P SRL
Sbjct: 246 PATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNPDSFSRL 302
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 341 PLSPIFSSRLHTMVPSGIAPTGITFPTSRVAFF 439
P++P+F SR H P G+ T FP F+
Sbjct: 11 PINPVFPSRAHPSPPLGL--TSNLFPIQTNKFY 41
>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.4 bits (53), Expect = 7.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 31 LVQWKPYLYVDGYHHR*GCS 90
+V + PYL GY HR C+
Sbjct: 645 VVDFSPYLLASGYSHRLDCT 664
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,906,986
Number of Sequences: 5004
Number of extensions: 63151
Number of successful extensions: 173
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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