Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_F04
(658 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0812 + 23383704-23384143,23384902-23385247 255 2e-68
07_01_1201 - 11419851-11419913,11420090-11420311 32 0.35
03_03_0091 - 14371528-14372661 30 1.9
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 29 2.5
09_02_0589 + 10969195-10969325,10971135-10971607,10971894-109720... 29 3.3
09_06_0373 + 22632638-22633195,22633279-22633485,22633583-226337... 29 4.3
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611... 29 4.3
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555... 29 4.3
04_01_0618 - 8094991-8097288 28 7.5
03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922 28 7.5
11_06_0377 - 22900042-22900452,22900527-22902236 27 9.9
02_03_0110 - 15350939-15352162,15352591-15353310,15353776-15353949 27 9.9
>12_02_0812 + 23383704-23384143,23384902-23385247
Length = 261
Score = 255 bits (625), Expect = 2e-68
Identities = 111/170 (65%), Positives = 140/170 (82%)
Frame = -2
Query: 657 HTKKRKGAXKLRSLDYAERHGYIKGXVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIA 478
HT RKG + RSLD+ ER+GY+KG V DIIHDPGRGAPLA V FR P+++K +KELF+A
Sbjct: 19 HTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVTFRHPFRYKHQKELFVA 78
Query: 477 PEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIG 298
EG+YTGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E +GDRG ARASG++A VI
Sbjct: 79 AEGMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVGDRGVFARASGDYAIVIS 138
Query: 297 HNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHK 148
HNPD +R+KLPSGAKK++PSS R M+G VAGGGR +KP+LKAG AYHK
Sbjct: 139 HNPDNGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPMLKAGNAYHK 188
Score = 49.2 bits (112), Expect = 3e-06
Identities = 19/21 (90%), Positives = 20/21 (95%)
Frame = -3
Query: 143 KVKRNCWPYVRGVAMNPVEHP 81
+VKRNCWP VRGVAMNPVEHP
Sbjct: 190 RVKRNCWPKVRGVAMNPVEHP 210
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = -1
Query: 76 GGGNHQHIGKASTVQ 32
GGGNHQHIG ASTV+
Sbjct: 212 GGGNHQHIGHASTVR 226
>07_01_1201 - 11419851-11419913,11420090-11420311
Length = 94
Score = 32.3 bits (70), Expect = 0.35
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = +2
Query: 185 SIRPPPATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSS 364
++ PPP +P +P R+ P G +G P A R+P +P+F S
Sbjct: 12 ALLPPPPPLPALPQGQQWRS-TGPTGKLCFCSFPAGALPPAAGAGQPAPDRQPATPLFPS 70
Query: 365 RL 370
R+
Sbjct: 71 RV 72
>03_03_0091 - 14371528-14372661
Length = 377
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Frame = +2
Query: 197 PPATIPTMPLLLDGRTFLAPDGS-FTLVRLASGLCPITVAKFPEARARRP-LSPIFSSRL 370
PPA P D P G+ T G+ P + A A A L+P+F +
Sbjct: 254 PPAPAPAPVKAEDALPHFFPQGAAVTATAHVHGVDPASAAASAAANAEGGILAPLFKEMV 313
Query: 371 HTMVPSGIAPTGITFP 418
M+ +G+AP + P
Sbjct: 314 RAMLTAGMAPPSLEPP 329
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 29.5 bits (63), Expect = 2.5
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -1
Query: 325 LWKLRHCDWT 296
LWK RHCDWT
Sbjct: 73 LWKCRHCDWT 82
>09_02_0589 +
10969195-10969325,10971135-10971607,10971894-10972032,
10972645-10972722,10972886-10973055,10973199-10973467,
10973655-10973781,10973964-10974035,10975084-10975273,
10975480-10975879
Length = 682
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 76 GGGNHQHIGKASTVQERNXCWAQSW 2
GGGN H G A+ V + CWA +
Sbjct: 21 GGGNDLHNGDAAVVLGKTWCWASRY 45
>09_06_0373 +
22632638-22633195,22633279-22633485,22633583-22633798,
22635375-22635441,22635531-22635677,22635811-22635906,
22636530-22636642,22636732-22636868,22637096-22637336
Length = 593
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/83 (22%), Positives = 35/83 (42%)
Frame = +2
Query: 11 RPAXVPLLYSGSLTYMLMVTTTXEDALQGSWQHHVHMASSYV*PXYLWYALPAFKIGLSI 190
R VP L + T + T ++A W+H V + ++ + + + +
Sbjct: 163 RADTVPRLTTHIRTLLDDSKKTLQEADYKEWKHVVQEIARFLRADSPFINMRPLRYSYAF 222
Query: 191 RPPPATIPTMPLLLDGRTFLAPD 259
PPP T+PT+P + R + D
Sbjct: 223 DPPPDTLPTVPPTVKKRGLVLND 245
>06_01_0811 -
6113491-6113925,6114079-6114185,6114569-6114788,
6115112-6115199,6115301-6115431,6115924-6116099,
6116465-6116529,6117014-6117094,6117219-6117358,
6117446-6117532,6117614-6117827,6118102-6118260,
6118860-6118936,6119629-6119796
Length = 715
Score = 28.7 bits (61), Expect = 4.3
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 202 WRWTY*QTYFESWKGIP 152
W WTY T+F SW +P
Sbjct: 70 WSWTYWSTFFLSWSIVP 86
>01_07_0112 -
41149461-41151674,41151688-41153265,41154344-41155507,
41155807-41156293,41156603-41156759,41157303-41157378
Length = 1891
Score = 28.7 bits (61), Expect = 4.3
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = +3
Query: 294 CVQSQWRSFQRHVPDDLYHPFSLQDCTQWY 383
C W++ H+P L H + +C WY
Sbjct: 73 CSCGLWKATTHHLPSALCHGLNYVNCAMWY 102
>04_01_0618 - 8094991-8097288
Length = 765
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 520 RSIQVQDKEGALHCSRRALHRPICLLW 440
R Q+ D++ + C+ R +P CLLW
Sbjct: 434 RRNQMVDQQSVIWCAARMTKKPNCLLW 460
>03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922
Length = 147
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -2
Query: 294 NPDAKRTRVKLPS--GAKKVLPSSNRGMVGIVAGGGRIDKPI 175
+P + RTR PS GA K ++ +G+ GG R+ PI
Sbjct: 45 SPTSTRTRTSTPSAPGAAKAASPNHVRAIGVREGGARLVGPI 86
>11_06_0377 - 22900042-22900452,22900527-22902236
Length = 706
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 432 ATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRL-ARASGNFATVIGHNPDAKRTRVK 265
A L+ G P+G + E VC L + D R+ A +G + G PD + RV+
Sbjct: 373 AALDDGEERPLGGLVEELFVCRLGD--DDEVRVGANHNGEGRRLRGPRPDGEEARVR 427
>02_03_0110 - 15350939-15352162,15352591-15353310,15353776-15353949
Length = 705
Score = 27.5 bits (58), Expect = 9.9
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Frame = -2
Query: 411 VMPVGAMPEG---TIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 241
V+PV +G + E RGR ARAS G N +KR R+ +P+ + +
Sbjct: 469 VVPVTHFQQGWNAPVAIGGEHLYNQRGREARASDAIVINGGDNNLSKRKRLTVPARSNSL 528
Query: 240 LPSSNRGMVGIVAGGGRIDKPI 175
+N I +G R+ PI
Sbjct: 529 --KNNMASNSIKSGSQRMWVPI 548
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,181,795
Number of Sequences: 37544
Number of extensions: 459995
Number of successful extensions: 1243
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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